RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 A0A1W2PQH9 124 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 GPR25O00155 361 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 AMPD3Q01432 767 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 ZNF252P-AS1Q0IIN9 211 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 IKBKEQ14164 716 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 ARSHQ5FYA8 562 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 PERM1Q5SV97 790 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 MAP1SQ66K74 1059 aaPredicted RBP4.41□□□□□ -1.7
TRAV28-201ENST00000557548 MRM1Q6IN84 353 aaKnown RBP4.41□□□□□ -1.7
TRAV28-201ENST00000557548 TTC6Q86TZ1 520 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 PDZD3Q86UT5 571 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 FAM178BQ8IXR5 827 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 C19orf47Q8N9M1 422 aaKnown RBP4.41□□□□□ -1.7
TRAV28-201ENST00000557548 THAP3Q8WTV1 239 aaPredicted RBP4.41□□□□□ -1.7
TRAV28-201ENST00000557548 FEZ1Q99689 392 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 ADAM19Q9H013 955 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 SMG9Q9H0W8 520 aaKnown RBP4.41□□□□□ -1.7
TRAV28-201ENST00000557548 SLC6A14Q9UN76 642 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 PHF24Q9UPV7 400 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 PTCH2Q9Y6C5 1203 aa4.41□□□□□ -1.7
TRAV28-201ENST00000557548 FAM177BA6PVY3 158 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 UPK3BL1B0FP48 263 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 UPK3BL2E5RIL1 263 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 ATE1O95260 518 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 HTR3BO95264 441 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 GSTP1P09211 210 aaKnown RBP4.4□□□□□ -1.71
TRAV28-201ENST00000557548 SELPP16109 830 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 MX2P20592 715 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 EPHA1P21709 976 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 GUCY2CP25092 1073 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 PCBP4P57723 403 aaKnown RBP4.4□□□□□ -1.71
TRAV28-201ENST00000557548 SSRP1Q08945 709 aaKnown RBP4.4□□□□□ -1.71
TRAV28-201ENST00000557548 PLEKHG6Q3KR16 790 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 TAF7LQ5H9L4 462 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 ZNF468Q5VIY5 522 aaPredicted RBP4.4□□□□□ -1.71
TRAV28-201ENST00000557548 GDF6Q6KF10 455 aaPredicted RBP4.4□□□□□ -1.71
TRAV28-201ENST00000557548 ELMSAN1Q6PJG2 1045 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 POLR3GLQ9BT43 218 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 ZC3H12CQ9C0D7 883 aaKnown RBP4.4□□□□□ -1.71
TRAV28-201ENST00000557548 ZMYM5Q9UJ78 669 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 PCDHA4Q9UN74 947 aa4.4□□□□□ -1.71
TRAV28-201ENST00000557548 MEIS3P2A8K0S8 358 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 SIN3BO75182 1162 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 PARNO95453 639 aaKnown RBP4.39□□□□□ -1.71
TRAV28-201ENST00000557548 ASMTLO95671 621 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 HOXB4P17483 251 aaPredicted RBP4.39□□□□□ -1.71
TRAV28-201ENST00000557548 CDC25BP30305 580 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 MAP2K3P46734 347 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 MASP1P48740 699 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 CABP4P57796 275 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 AP3B2Q13367 1082 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 WIPI1Q5MNZ9 446 aaPredicted RBP4.39□□□□□ -1.71
TRAV28-201ENST00000557548 HGSNATQ68CP4 663 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 JMYQ8N9B5 988 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 ST13P5Q8NFI4 369 aaPredicted RBP4.39□□□□□ -1.71
TRAV28-201ENST00000557548 DDX54Q8TDD1 881 aaKnown RBP4.39□□□□□ -1.71
TRAV28-201ENST00000557548 GPBAR1Q8TDU6 330 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 TMEM40Q8WWA1 233 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 ACSBG1Q96GR2 724 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 TRERF1Q96PN7 1200 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 TM9SF2Q99805 663 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 LPIN3Q9BQK8 851 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 DDX56Q9NY93 547 aaKnown RBP4.39□□□□□ -1.71
TRAV28-201ENST00000557548 CD2APQ9Y5K6 639 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 CORINQ9Y5Q5 1042 aa4.39□□□□□ -1.71
TRAV28-201ENST00000557548 FAM86C2PA6NEL3 165 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 SOX1O00570 391 aaPredicted RBP4.38□□□□□ -1.71
TRAV28-201ENST00000557548 C2CD2LO14523 706 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 ECEL1O95672 775 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 BMP4P12644 408 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 HCLS1P14317 486 aaPredicted RBP4.38□□□□□ -1.71
TRAV28-201ENST00000557548 TAL1P17542 331 aaPredicted RBP4.38□□□□□ -1.71
TRAV28-201ENST00000557548 CDC27P30260 824 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 ADH7P40394 386 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 GSTM4Q03013 218 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 TCEA2Q15560 299 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 ZYXQ15942 572 aaKnown RBP4.38□□□□□ -1.71
TRAV28-201ENST00000557548 C21orf62-AS1Q17RA5 79 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 LRRFIP1Q32MZ4 808 aaKnown RBP4.38□□□□□ -1.71
TRAV28-201ENST00000557548 SCARA3Q6AZY7 606 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 OVOS1Q6IE37 1185 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 LRFN4Q6PJG9 635 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 STAG1Q8WVM7 1258 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 EDARADDQ8WWZ3 215 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 SLC7A3Q8WY07 619 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 TNFRSF25Q93038 417 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 IRF2BPLQ9H1B7 796 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 TMX1Q9H3N1 280 aa4.38□□□□□ -1.71
TRAV28-201ENST00000557548 H3BRJ5 948 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 GFRA2O00451 464 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 DNAJA2O60884 412 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 S100BP04271 92 aaPredicted RBP4.37□□□□□ -1.71
TRAV28-201ENST00000557548 FAM153BP0C7A2 387 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 INPP5AQ14642 412 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 PSAPL1Q6NUJ1 521 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 TXNDC11Q6PKC3 985 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 VHLLQ6RSH7 139 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 EEPD1Q7L9B9 569 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 PLPPR2Q96GM1 343 aa4.37□□□□□ -1.71
TRAV28-201ENST00000557548 CACNA2D2Q9NY47 1150 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms