RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 ZNF287Q9HBT7 754 aa14.61□□□□□ -0.07
SHMT2-233ENST00000557529 BAZ2AQ9UIF9 1905 aaKnown RBP14.61□□□□□ -0.07
SHMT2-233ENST00000557529 F8W031 263 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-233ENST00000557529 MAPKAPK5Q8IW41 473 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 DDX11Q96FC9 970 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 ZSCAN10Q96SZ4 725 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-233ENST00000557529 NID2Q14112 1375 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 TNKSO95271 1327 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 FLT1P17948 1338 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 GOLGA8AA7E2F4 631 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 H3BQV1 296 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 TRAK2O60296 914 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 PPP2R5BQ15173 497 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 SEC23AQ15436 765 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 CCDC178Q5BJE1 867 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 DALRD3Q5D0E6 543 aaKnown RBP14.6□□□□□ -0.07
SHMT2-233ENST00000557529 IFFO2Q5TF58 517 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 RGS22Q8NE09 1264 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 MXD3Q9BW11 206 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 CD2APQ9Y5K6 639 aa14.6□□□□□ -0.07
SHMT2-233ENST00000557529 NAV1Q8NEY1 1877 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 MYO3BQ8WXR4 1341 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 CCDC196A0A1B0GTZ2 297 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 SMIM22K7EJ46 135 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 PRDM1O75626 825 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 CRKP46108 304 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 SCNN1DP51172 638 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 MICU3Q86XE3 530 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 LARGE2Q8N3Y3 721 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 ZDHHC15Q96MV8 337 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 ZKSCAN3Q9BRR0 538 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 SENP2Q9HC62 589 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 KCNQ5Q9NR82 932 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 USP40Q9NVE5 1235 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 SERPINA10Q9UK55 444 aa14.59□□□□□ -0.07
SHMT2-233ENST00000557529 TSPY2A6NKD2 308 aa14.58□□□□□ -0.08
SHMT2-233ENST00000557529 CALM1P0DP23 149 aa14.58□□□□□ -0.08
SHMT2-233ENST00000557529 CALM2P0DP24 149 aa14.58□□□□□ -0.08
SHMT2-233ENST00000557529 CALM3P0DP25 149 aa14.58□□□□□ -0.08
SHMT2-233ENST00000557529 IFIT1BQ5T764 474 aaKnown RBP14.58□□□□□ -0.08
SHMT2-233ENST00000557529 CDC37L1Q7L3B6 337 aa14.58□□□□□ -0.08
SHMT2-233ENST00000557529 TTC6Q86TZ1 520 aa14.58□□□□□ -0.08
SHMT2-233ENST00000557529 ZNF654Q8IZM8 581 aa14.58□□□□□ -0.08
SHMT2-233ENST00000557529 ENAHQ8N8S7 591 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-233ENST00000557529 MKNK2Q9HBH9 465 aa14.58□□□□□ -0.08
SHMT2-233ENST00000557529 ORC3Q9UBD5 711 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-233ENST00000557529 SAP30BPQ9UHR5 308 aaKnown RBP14.58□□□□□ -0.08
SHMT2-233ENST00000557529 DTNBO60941 627 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 RTN1Q16799 776 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 CSPP1Q1MSJ5 1256 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 APOBEC3HQ6NTF7 200 aaKnown RBP14.57□□□□□ -0.08
SHMT2-233ENST00000557529 CDC42EP5Q6NZY7 148 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 C16orf86Q6ZW13 317 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 CATIPQ7Z7H3 387 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 RAB11FIP4Q86YS3 637 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 KIAA0825Q8IV33 1275 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 ZNF444Q8N0Y2 327 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-233ENST00000557529 SGIP1Q9BQI5 828 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 ZSCAN16Q9H4T2 348 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-233ENST00000557529 LMBRD1Q9NUN5 540 aa14.57□□□□□ -0.08
SHMT2-233ENST00000557529 YDJCA8MPS7 323 aa14.56□□□□□ -0.08
SHMT2-233ENST00000557529 PRPF40AO75400 957 aaKnown RBP14.56□□□□□ -0.08
SHMT2-233ENST00000557529 WDHD1O75717 1129 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-233ENST00000557529 DDAH1O94760 285 aa14.56□□□□□ -0.08
SHMT2-233ENST00000557529 FDPSP14324 419 aaKnown RBP14.56□□□□□ -0.08
SHMT2-233ENST00000557529 ADD1P35611 737 aaKnown RBP14.56□□□□□ -0.08
SHMT2-233ENST00000557529 EVX2Q03828 476 aa14.56□□□□□ -0.08
SHMT2-233ENST00000557529 NIM1KQ8IY84 436 aa14.56□□□□□ -0.08
SHMT2-233ENST00000557529 TMEM87AQ8NBN3 555 aa14.56□□□□□ -0.08
SHMT2-233ENST00000557529 DYNLL2Q96FJ2 89 aa14.56□□□□□ -0.08
SHMT2-233ENST00000557529 ZNF277Q9NRM2 450 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-233ENST00000557529 TCP11L1Q9NUJ3 509 aa14.56□□□□□ -0.08
SHMT2-233ENST00000557529 DDX60LQ5H9U9 1706 aaKnown RBP14.56□□□□□ -0.08
SHMT2-233ENST00000557529 STK36Q9NRP7 1315 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 SCN9AQ15858 1988 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 NPM3O75607 178 aaKnown RBP14.55□□□□□ -0.08
SHMT2-233ENST00000557529 IFNAR1P17181 557 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 RXRAP19793 462 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 CDC27P30260 824 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 IARSP41252 1262 aaKnown RBP14.55□□□□□ -0.08
SHMT2-233ENST00000557529 PLCD1P51178 756 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 TFAP4Q01664 338 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 KLHL40Q2TBA0 621 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 FAM47AQ5JRC9 791 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 DGKHQ86XP1 1220 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 FANCBQ8NB91 859 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 WASF1Q92558 559 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 ANKS1AQ92625 1134 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 C8orf76Q96K31 380 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 MYL10Q9BUA6 226 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 FAM217BQ9NTX9 383 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-233ENST00000557529 PPP1R1BQ9UD71 204 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-233ENST00000557529 TAOK2Q9UL54 1235 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 ZNRF3Q9ULT6 936 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 CDK5RAP2Q96SN8 1893 aa14.55□□□□□ -0.08
SHMT2-233ENST00000557529 MBD3O95983 291 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 VIL1P09327 827 aaKnown RBP14.54□□□□□ -0.08
SHMT2-233ENST00000557529 TSPY3P0CV98 308 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 TSPY8P0CW00 308 aa14.54□□□□□ -0.08
SHMT2-233ENST00000557529 NCLP19338 710 aaKnown RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms