RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 PFASO15067 1338 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 MYH8P13535 1937 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 CIAO1O76071 339 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 BTDP43251 543 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 RHBDL3P58872 404 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 GPR153Q6NV75 609 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 DZIP1Q86YF9 867 aaKnown RBP10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 PROCA1Q8NCQ7 364 aaPredicted RBP10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 ZNF384Q8TF68 577 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 SSH1Q8WYL5 1049 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 TRIB2Q92519 343 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 GNL3LQ9NVN8 582 aaKnown RBP10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 GJD2Q9UKL4 321 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 PNMA3Q9UL41 463 aa10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 PA2G4Q9UQ80 394 aaKnown RBP10.18□□□□□ -0.78
CCDC88C-214ENST00000557507 ZNFX1Q9P2E3 1918 aaKnown RBP10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 RPTORQ8N122 1335 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 DNAH12Q6ZR08 3092 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 MYO9BQ13459 2157 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 CENPBP07199 599 aaPredicted RBP10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 HMGCS2P54868 508 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 SPP2Q13103 211 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 RRP1BQ14684 758 aaKnown RBP10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 LRIT3Q3SXY7 679 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 CCDC102BQ68D86 513 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 TDHQ8IZJ6 230 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 NBPF3Q9H094 633 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 C11orf49Q9H6J7 331 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 MTMR10Q9NXD2 777 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 CEP126Q9P2H0 1117 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 ABCF2Q9UG63 623 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 STXBP5LQ9Y2K9 1186 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 CDH23Q9H251 3354 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 EYSQ5T1H1 3165 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 PARP14Q460N5 1801 aa10.17□□□□□ -0.78
CCDC88C-214ENST00000557507 PDS5AQ29RF7 1337 aaKnown RBP10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 ZBTB22O15209 634 aa10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 TBC1D12O60347 775 aa10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 PEX10O60683 326 aa10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 GCLCP48506 637 aaPredicted RBP10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 MAP3K21Q5TCX8 1036 aa10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 ZGPATQ8N5A5 531 aaKnown RBP10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 ZNF280CQ8ND82 737 aa10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 FAM163AQ96GL9 167 aaPredicted RBP10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 ASCC2Q9H1I8 757 aaPredicted RBP10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 HMX1Q9NP08 348 aaPredicted RBP10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 FBXO3Q9UK99 471 aa10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 OGDHLQ9ULD0 1010 aa10.16□□□□□ -0.78
CCDC88C-214ENST00000557507 GPR75-ASB3A0A0A6YYF3 556 aa10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 UBTFL1P0CB47 393 aaPredicted RBP10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 PRKAR2AP13861 404 aaKnown RBP10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 IL15P40933 162 aaPredicted RBP10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 MECOMQ03112 1051 aa10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 UBE2OQ9C0C9 1292 aaKnown RBP10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 OSBPL5Q9H0X9 879 aaPredicted RBP10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 MORF4L1Q9UBU8 362 aa10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 SMCHD1A6NHR9 2005 aa10.15□□□□□ -0.78
CCDC88C-214ENST00000557507 NAV1Q8NEY1 1877 aa10.15□□□□□ -0.79
CCDC88C-214ENST00000557507 A0A0G2JMZ2 1700 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 NPM3O75607 178 aaKnown RBP10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 COL6A1P12109 1028 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 CYP2B6P20813 491 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 CAP2P40123 477 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 TIMM10P62072 90 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 PI16Q6UXB8 463 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 SLF2Q8IX21 1173 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 FAM9BQ8IZU0 186 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 COL25A1Q9BXS0 654 aaPredicted RBP10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 TXNRD2Q9NNW7 524 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 PLXNA1Q9UIW2 1896 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 SPTBN5Q9NRC6 3674 aaKnown RBP10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 COL11A1P12107 1806 aaPredicted RBP10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 ZNF236Q9UL36 1845 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 NCOR1O75376 2440 aa10.14□□□□□ -0.79
CCDC88C-214ENST00000557507 PRUNE2Q8WUY3 3088 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 A0A1B0GUL7 405 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 JAG1P78504 1218 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 PABPC4Q13310 644 aaKnown RBP eCLIP10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 MTMR2Q13614 643 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 LRRC26Q2I0M4 334 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 SHROOM1Q2M3G4 852 aaPredicted RBP10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 SH3D19Q5HYK7 790 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 ERICH6Q7L0X2 663 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 NSUN4Q96CB9 384 aaKnown RBP10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 XAGE2Q96GT9 111 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 GUCD1Q96NT3 240 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 COPRSQ9NQ92 184 aa10.13□□□□□ -0.79
CCDC88C-214ENST00000557507 USP17L5A8MUK1 530 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 ANP32CO43423 234 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 CCND3P30281 292 aaPredicted RBP10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 IRX3P78415 501 aaPredicted RBP10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 MDM2Q00987 491 aaPredicted RBP10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 CACNB2Q08289 660 aaPredicted RBP10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 CCL14Q16627 93 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 SPTY2D1Q68D10 685 aaPredicted RBP10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 POTEEQ6S8J3 1075 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 TBC1D9Q6ZT07 1266 aa10.12□□□□□ -0.79
CCDC88C-214ENST00000557507 SOCS4Q8WXH5 440 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms