RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CC2D2BQ6DHV5 1058 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 CTR9Q6PD62 1173 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 C8orf76Q96K31 380 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 ZC3H12CQ9C0D7 883 aaKnown RBP14.71□□□□□ -0.05
SHMT2-229ENST00000557348 POLLQ9UGP5 575 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 ANKRD31Q8N7Z5 1873 aa14.71□□□□□ -0.05
SHMT2-229ENST00000557348 GOLGA6L4A6NEF3 574 aa14.71□□□□□ -0.06
SHMT2-229ENST00000557348 USP17L12C9JPN9 530 aa14.71□□□□□ -0.06
SHMT2-229ENST00000557348 USP17L21D6R901 530 aa14.71□□□□□ -0.06
SHMT2-229ENST00000557348 H0YIN7 160 aa14.71□□□□□ -0.06
SHMT2-229ENST00000557348 USP5P45974 858 aa14.71□□□□□ -0.06
SHMT2-229ENST00000557348 LRSAM1Q6UWE0 723 aa14.71□□□□□ -0.06
SHMT2-229ENST00000557348 DPP8Q6V1X1 898 aaPredicted RBP14.71□□□□□ -0.06
SHMT2-229ENST00000557348 ROBO3Q96MS0 1386 aa14.7□□□□□ -0.06
SHMT2-229ENST00000557348 CCDC183Q5T5S1 534 aa14.7□□□□□ -0.06
SHMT2-229ENST00000557348 FERMT3Q86UX7 667 aa14.7□□□□□ -0.06
SHMT2-229ENST00000557348 TRIM22Q8IYM9 498 aa14.7□□□□□ -0.06
SHMT2-229ENST00000557348 FBXO18Q8NFZ0 1043 aa14.7□□□□□ -0.06
SHMT2-229ENST00000557348 CNKSR1Q969H4 720 aa14.7□□□□□ -0.06
SHMT2-229ENST00000557348 SPATA32Q96LK8 384 aa14.7□□□□□ -0.06
SHMT2-229ENST00000557348 GPHNQ9NQX3 736 aaPredicted RBP14.7□□□□□ -0.06
SHMT2-229ENST00000557348 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.7□□□□□ -0.06
SHMT2-229ENST00000557348 IFNAR1P17181 557 aa14.69□□□□□ -0.06
SHMT2-229ENST00000557348 IARSP41252 1262 aaKnown RBP14.69□□□□□ -0.06
SHMT2-229ENST00000557348 EN1Q05925 392 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-229ENST00000557348 TRIM29Q14134 588 aa14.69□□□□□ -0.06
SHMT2-229ENST00000557348 FOXD4L6Q3SYB3 417 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-229ENST00000557348 MFSD14BQ5SR56 506 aa14.69□□□□□ -0.06
SHMT2-229ENST00000557348 FOXD4L3Q6VB84 417 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-229ENST00000557348 MICU3Q86XE3 530 aa14.69□□□□□ -0.06
SHMT2-229ENST00000557348 ZSCAN10Q96SZ4 725 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-229ENST00000557348 RBM28Q9NW13 759 aaKnown RBP14.69□□□□□ -0.06
SHMT2-229ENST00000557348 PRDM4Q9UKN5 801 aa14.69□□□□□ -0.06
SHMT2-229ENST00000557348 GAKO14976 1311 aa14.69□□□□□ -0.06
SHMT2-229ENST00000557348 GPR75-ASB3A0A0A6YYF3 556 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 DDAH1O94760 285 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 FDPSP14324 419 aaKnown RBP14.68□□□□□ -0.06
SHMT2-229ENST00000557348 SSRP1Q08945 709 aaKnown RBP14.68□□□□□ -0.06
SHMT2-229ENST00000557348 RTN1Q16799 776 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 GDPD2Q9HCC8 539 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 LAMB1P07942 1786 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 TNKSO95271 1327 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 G3V3G9 751 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 GTF2F1P35269 517 aaKnown RBP eCLIP14.68□□□□□ -0.06
SHMT2-229ENST00000557348 FKBP1AP62942 108 aaKnown RBP14.68□□□□□ -0.06
SHMT2-229ENST00000557348 DCAF8Q5TAQ9 597 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 CATIPQ7Z7H3 387 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 C2CD5Q86YS7 1000 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 ZNF654Q8IZM8 581 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 SLC16A10Q8TF71 515 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 RTFDC1Q9BY42 306 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-229ENST00000557348 MCM9Q9NXL9 1143 aa14.68□□□□□ -0.06
SHMT2-229ENST00000557348 UQCRHLA0A096LP55 91 aa14.67□□□□□ -0.06
SHMT2-229ENST00000557348 RANBP6O60518 1105 aaKnown RBP14.67□□□□□ -0.06
SHMT2-229ENST00000557348 FMNL1O95466 1100 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-229ENST00000557348 UQCRHP07919 91 aa14.67□□□□□ -0.06
SHMT2-229ENST00000557348 SEC23AQ15436 765 aa14.67□□□□□ -0.06
SHMT2-229ENST00000557348 IFIT1BQ5T764 474 aaKnown RBP14.67□□□□□ -0.06
SHMT2-229ENST00000557348 C12orf60Q5U649 245 aa14.67□□□□□ -0.06
SHMT2-229ENST00000557348 PODNQ7Z5L7 613 aa14.67□□□□□ -0.06
SHMT2-229ENST00000557348 SUPT20HQ8NEM7 779 aa14.67□□□□□ -0.06
SHMT2-229ENST00000557348 LEO1Q8WVC0 666 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-229ENST00000557348 TMEM63CQ9P1W3 806 aa14.67□□□□□ -0.06
SHMT2-229ENST00000557348 MKRN1Q9UHC7 482 aaKnown RBP14.67□□□□□ -0.06
SHMT2-229ENST00000557348 XBP1P17861 261 aa14.66□□□□□ -0.06
SHMT2-229ENST00000557348 EZH2Q15910 746 aaKnown RBP14.66□□□□□ -0.06
SHMT2-229ENST00000557348 NTRK3Q16288 839 aa14.66□□□□□ -0.06
SHMT2-229ENST00000557348 CHAMP1Q96JM3 812 aa14.66□□□□□ -0.06
SHMT2-229ENST00000557348 ALG1Q9BT22 464 aa14.66□□□□□ -0.06
SHMT2-229ENST00000557348 CCDC94Q9BW85 323 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-229ENST00000557348 GTPBP4Q9BZE4 634 aaKnown RBP14.66□□□□□ -0.06
SHMT2-229ENST00000557348 TAOK2Q9UL54 1235 aa14.66□□□□□ -0.06
SHMT2-229ENST00000557348 R3HCC1Q9Y3T6 440 aaKnown RBP14.66□□□□□ -0.06
SHMT2-229ENST00000557348 TACC3Q9Y6A5 838 aa14.66□□□□□ -0.06
SHMT2-229ENST00000557348 GADD45BO75293 160 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 DEXIO95424 95 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 TPM3P06753 285 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 ADD1P35611 737 aaKnown RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 BTDP43251 543 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 TTC6Q86TZ1 520 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 FANCBQ8NB91 859 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 ZNF622Q969S3 477 aaKnown RBP eCLIP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 DDX19AQ9NUU7 478 aaKnown RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 RBM27Q9P2N5 1060 aaKnown RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 COL11A2P13942 1736 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 CDC27P30260 824 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 AKAP17AQ02040 695 aaKnown RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 KIAA2012Q0VF49 1180 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 SAFBQ15424 915 aaKnown RBP eCLIP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 DIXDC1Q155Q3 683 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 MSL1Q68DK7 614 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 TEX11Q8IYF3 940 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 ENAHQ8N8S7 591 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 SH3RF3Q8TEJ3 882 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 GPR101Q96P66 508 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 MAP3K14Q99558 947 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 RNF26Q9BY78 433 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-229ENST00000557348 TCP11L1Q9NUJ3 509 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 RCOR1Q9UKL0 485 aa14.65□□□□□ -0.06
SHMT2-229ENST00000557348 JAG2Q9Y219 1238 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms