RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 SBK1Q52WX2 424 aa16.72■□□□□ 0.27
VIPAS39-208ENST00000556412 FOXP4Q8IVH2 680 aaPredicted RBP16.72■□□□□ 0.27
VIPAS39-208ENST00000556412 C2orf69Q8N8R5 385 aa16.72■□□□□ 0.27
VIPAS39-208ENST00000556412 GBA2Q9HCG7 927 aaPredicted RBP16.72■□□□□ 0.27
VIPAS39-208ENST00000556412 U3KPZ7 1027 aaPredicted RBP16.72■□□□□ 0.27
VIPAS39-208ENST00000556412 AK9Q5TCS8 1911 aa16.71■□□□□ 0.27
VIPAS39-208ENST00000556412 CTDSPL2Q05D32 466 aa16.71■□□□□ 0.27
VIPAS39-208ENST00000556412 CST9Q5W186 159 aa16.71■□□□□ 0.27
VIPAS39-208ENST00000556412 SLC44A5Q8NCS7 719 aa16.71■□□□□ 0.27
VIPAS39-208ENST00000556412 ZNF341Q9BYN7 854 aa16.71■□□□□ 0.27
VIPAS39-208ENST00000556412 HERC5Q9UII4 1024 aaKnown RBP16.71■□□□□ 0.27
VIPAS39-208ENST00000556412 RBM8AQ9Y5S9 174 aaKnown RBP16.71■□□□□ 0.27
VIPAS39-208ENST00000556412 ZNF213O14771 459 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 SLC3A2P08195 630 aaKnown RBP16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 IMMTQ16891 758 aaKnown RBP16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 C8orf34Q49A92 452 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 ARMC9Q7Z3E5 817 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 MAP4K1Q92918 833 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 WRNIP1Q96S55 665 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 EHD4Q9H223 541 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 ZMYM6O95789 1325 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 ECM29Q5VYK3 1845 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 UBE2Q2LH0YL09 131 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 IREB2P48200 963 aaKnown RBP16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 DNAJC18Q9H819 358 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 TOMM22Q9NS69 142 aa16.7■□□□□ 0.26
VIPAS39-208ENST00000556412 USP2O75604 605 aaPredicted RBP16.69■□□□□ 0.26
VIPAS39-208ENST00000556412 PRDM1O75626 825 aa16.69■□□□□ 0.26
VIPAS39-208ENST00000556412 MKNK2Q9HBH9 465 aa16.69■□□□□ 0.26
VIPAS39-208ENST00000556412 ABT1Q9ULW3 272 aaKnown RBP16.69■□□□□ 0.26
VIPAS39-208ENST00000556412 TMEM88BA6NKF7 163 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 TBC1D12O60347 775 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 C16orf86Q6ZW13 317 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 GDF11O95390 407 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 INPP5BP32019 993 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 CDK8P49336 464 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 GABPAQ06546 454 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 PDE4BQ07343 736 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 ZKSCAN4Q969J2 545 aaPredicted RBP16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 KLRG1Q96E93 195 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 INCENPQ9NQS7 918 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 SWAP70Q9UH65 585 aa16.68■□□□□ 0.26
VIPAS39-208ENST00000556412 MPHOSPH10O00566 681 aaKnown RBP16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 SEC24BO95487 1268 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 SHMT1P34896 483 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 APLP1P51693 650 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 HUNKP57058 714 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 FKBP1BP68106 108 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 RRP12Q5JTH9 1297 aaKnown RBP16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 METTL16Q86W50 562 aaKnown RBP16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 TBC1D10CQ8IV04 446 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 ZNF287Q9HBT7 754 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 CSADQ9Y600 493 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 NAV1Q8NEY1 1877 aa16.67■□□□□ 0.26
VIPAS39-208ENST00000556412 PHF20L1A8MW92 1017 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 CYP21A2P08686 494 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 MAP3K9P80192 1104 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 MAP3K10Q02779 954 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 CERKLQ49MI3 558 aaPredicted RBP16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 NBPF3Q9H094 633 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 ANAPC4Q9UJX5 808 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 ROBO3Q96MS0 1386 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 EIF5BO60841 1220 aaKnown RBP16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 RRP1BQ14684 758 aaKnown RBP16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 CREB3L3Q68CJ9 461 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 MFSD6Q6ZSS7 791 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 ANKRD13AQ8IZ07 590 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 CLMNQ96JQ2 1002 aa16.66■□□□□ 0.26
VIPAS39-208ENST00000556412 DDX60LQ5H9U9 1706 aaKnown RBP16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 SLC27A2O14975 620 aa16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 C1QTNF8P60827 252 aa16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 VGLL4Q14135 290 aa16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 SHROOM1Q2M3G4 852 aaPredicted RBP16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 AKNAD1Q5T1N1 836 aa16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 RNF20Q5VTR2 975 aa16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 TATDN1Q6P1N9 297 aa16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 PAXIP1Q6ZW49 1069 aaPredicted RBP16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 ZNF444Q8N0Y2 327 aaPredicted RBP16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 RNF41Q9H4P4 317 aaPredicted RBP16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 ELP3Q9H9T3 547 aa16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 TAF6LQ9Y6J9 622 aa16.65■□□□□ 0.26
VIPAS39-208ENST00000556412 RANBP6O60518 1105 aaKnown RBP16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 NECTIN1Q15223 517 aa16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 MAP3K11Q16584 847 aa16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 ABCB5Q2M3G0 1257 aa16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 SAPCD2Q86UD0 394 aa16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 PICK1Q9NRD5 415 aa16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 ZNF112Q9UJU3 913 aa16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 TACC3Q9Y6A5 838 aa16.64■□□□□ 0.25
VIPAS39-208ENST00000556412 CTNND1O60716 968 aaKnown RBP16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 GH2P01242 217 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 AKR1B1P15121 316 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 RASA1P20936 1047 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 MCCP23508 829 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 CAP2P40123 477 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 FAM47AQ5JRC9 791 aa16.63■□□□□ 0.25
VIPAS39-208ENST00000556412 SCYL3Q8IZE3 742 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms