RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 DACH1Q9UI36 760 aa15.51■□□□□ 0.07
SHMT2-222ENST00000555774 ANAPC4Q9UJX5 808 aa15.51■□□□□ 0.07
SHMT2-222ENST00000555774 DOT1LQ8TEK3 1739 aa15.51■□□□□ 0.07
SHMT2-222ENST00000555774 CRACR2BQ8N4Y2 399 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-222ENST00000555774 PPP1R13BQ96KQ4 1090 aa15.51■□□□□ 0.07
SHMT2-222ENST00000555774 CDC5LQ99459 802 aaKnown RBP15.51■□□□□ 0.07
SHMT2-222ENST00000555774 ARID3AQ99856 593 aa15.51■□□□□ 0.07
SHMT2-222ENST00000555774 UBASH3AP57075 661 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 LONRF3Q496Y0 759 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 STK11IPQ8N1F8 1099 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 TRIML1Q8N9V2 468 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 INCENPQ9NQS7 918 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 FBXO2Q9UK22 296 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-222ENST00000555774 COL22A1Q8NFW1 1626 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-222ENST00000555774 BCL9LQ86UU0 1499 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 PHLPP1O60346 1717 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 PRKAB2O43741 272 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 CAMTA2O94983 1202 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 SERPINC1P01008 464 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 MDM2Q00987 491 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-222ENST00000555774 NT5DC1Q5TFE4 455 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 KANK3Q6NY19 840 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 FCHSD1Q86WN1 690 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 SEC31BQ9NQW1 1179 aa15.5■□□□□ 0.07
SHMT2-222ENST00000555774 BTBD18B2RXH4 712 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 SLU7O95391 586 aaKnown RBP15.49■□□□□ 0.07
SHMT2-222ENST00000555774 NTSR2O95665 410 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 TOB1P50616 345 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-222ENST00000555774 PPARAQ07869 468 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 VSTM4Q8IW00 320 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 ZNF654Q8IZM8 581 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 RNF26Q9BY78 433 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-222ENST00000555774 L2HGDHQ9H9P8 463 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 LRP2BPQ9P2M1 347 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 PCDHA5Q9Y5H7 936 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 ZNF804BA4D1E1 1349 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 ATP1A3P13637 1013 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 BCAMP50895 628 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 RRP12Q5JTH9 1297 aaKnown RBP15.49■□□□□ 0.07
SHMT2-222ENST00000555774 MLKLQ8NB16 471 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 FANCBQ8NB91 859 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 ESR2Q92731 530 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 UBAC1Q9BSL1 405 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 TMX1Q9H3N1 280 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 OGFRQ9NZT2 677 aa15.49■□□□□ 0.07
SHMT2-222ENST00000555774 COL16A1Q07092 1604 aaPredicted RBP15.49■□□□□ 0.07
SHMT2-222ENST00000555774 PCP11498 1178 aaKnown RBP15.48■□□□□ 0.07
SHMT2-222ENST00000555774 XBP1P17861 261 aa15.48■□□□□ 0.07
SHMT2-222ENST00000555774 GUCY1A2P33402 732 aa15.48■□□□□ 0.07
SHMT2-222ENST00000555774 CRKLP46109 303 aaKnown RBP15.48■□□□□ 0.07
SHMT2-222ENST00000555774 POSTNQ15063 836 aa15.48■□□□□ 0.07
SHMT2-222ENST00000555774 CT47A1Q5JQC4 288 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-222ENST00000555774 ZNF397Q8NF99 534 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-222ENST00000555774 TOMM22Q9NS69 142 aa15.48■□□□□ 0.07
SHMT2-222ENST00000555774 GNL3LQ9NVN8 582 aaKnown RBP15.48■□□□□ 0.07
SHMT2-222ENST00000555774 SRPRBQ9Y5M8 271 aaKnown RBP15.48■□□□□ 0.07
SHMT2-222ENST00000555774 CHRNDQ07001 517 aa15.48■□□□□ 0.07
SHMT2-222ENST00000555774 CFAP100Q494V2 611 aa15.48■□□□□ 0.07
SHMT2-222ENST00000555774 UTP14CQ5TAP6 766 aaKnown RBP15.48■□□□□ 0.07
SHMT2-222ENST00000555774 ISM2Q6H9L7 571 aa15.48■□□□□ 0.07
SHMT2-222ENST00000555774 CCDC34Q96HJ3 373 aa15.48■□□□□ 0.07
SHMT2-222ENST00000555774 ZNF215Q9UL58 517 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-222ENST00000555774 CYP7A1P22680 504 aa15.47■□□□□ 0.07
SHMT2-222ENST00000555774 SARSP49591 514 aaKnown RBP15.47■□□□□ 0.07
SHMT2-222ENST00000555774 FOXP4Q8IVH2 680 aaPredicted RBP15.47■□□□□ 0.07
SHMT2-222ENST00000555774 MAN1B1Q9UKM7 699 aa15.47■□□□□ 0.07
SHMT2-222ENST00000555774 THRAP3Q9Y2W1 955 aaKnown RBP15.47■□□□□ 0.07
SHMT2-222ENST00000555774 PHLPP2Q6ZVD8 1323 aa15.47■□□□□ 0.07
SHMT2-222ENST00000555774 MAGEB6P1A0A0J9YX57 407 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 UBE2Q2LH0YL09 131 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 TOP1P11387 765 aaKnown RBP15.46■□□□□ 0.07
SHMT2-222ENST00000555774 CBX1P83916 185 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 SEC23AQ15436 765 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 ENOX1Q8TC92 643 aaKnown RBP15.46■□□□□ 0.07
SHMT2-222ENST00000555774 KCNJ14Q9UNX9 436 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 ZNF652Q9Y2D9 606 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 SNAP23O00161 211 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 BMP15O95972 392 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 ATP6V1AP38606 617 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 MORC3Q14149 939 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 SMARCE1Q969G3 411 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 RBM28Q9NW13 759 aaKnown RBP15.46■□□□□ 0.07
SHMT2-222ENST00000555774 FANCLQ9NW38 375 aa15.46■□□□□ 0.07
SHMT2-222ENST00000555774 NIP7Q9Y221 180 aaKnown RBP eCLIP15.46■□□□□ 0.07
SHMT2-222ENST00000555774 AKAP17AQ02040 695 aaKnown RBP15.45■□□□□ 0.06
SHMT2-222ENST00000555774 MIGA1Q8NAN2 632 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 DPF2Q92785 391 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 ZKSCAN3Q9BRR0 538 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 BRIP1Q9BX63 1249 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 GTPBP4Q9BZE4 634 aaKnown RBP15.45■□□□□ 0.06
SHMT2-222ENST00000555774 TNKSO95271 1327 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 LOC102724428A0A0B4J2F2 783 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 CALM1P0DP23 149 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 CALM2P0DP24 149 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 CALM3P0DP25 149 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 SIK1P57059 783 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 UBE4AQ14139 1066 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 NUP133Q8WUM0 1156 aa15.45■□□□□ 0.06
SHMT2-222ENST00000555774 AHDC1Q5TGY3 1603 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-222ENST00000555774 ZSCAN12O43309 604 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms