RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 TEX14Q8IWB6 1497 aa19.53■□□□□ 0.72
SYNE3-204ENST00000555759 VPS52Q8N1B4 723 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 CLCN6P51797 869 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 IDI1Q13907 227 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 CFAP157Q5JU67 520 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 TTC6Q86TZ1 520 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 NAP1L4Q99733 375 aaKnown RBP19.52■□□□□ 0.72
SYNE3-204ENST00000555759 TRIM35Q9UPQ4 493 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 RGS22Q8NE09 1264 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 KLHL14Q9P2G3 628 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 RIMS2Q9UQ26 1411 aa19.52■□□□□ 0.72
SYNE3-204ENST00000555759 NBPF14Q5TI25 921 aa19.52■□□□□ 0.71
SYNE3-204ENST00000555759 DIS3L2Q8IYB7 885 aaKnown RBP19.52■□□□□ 0.71
SYNE3-204ENST00000555759 ABCC4O15439 1325 aa19.52■□□□□ 0.71
SYNE3-204ENST00000555759 LRRD1A4D1F6 860 aa19.52■□□□□ 0.71
SYNE3-204ENST00000555759 PPP2R5BQ15173 497 aa19.52■□□□□ 0.71
SYNE3-204ENST00000555759 ZNF174Q15697 407 aa19.52■□□□□ 0.71
SYNE3-204ENST00000555759 AKAP4Q5JQC9 854 aa19.52■□□□□ 0.71
SYNE3-204ENST00000555759 DMRT2Q9Y5R5 561 aa19.52■□□□□ 0.71
SYNE3-204ENST00000555759 NDC80O14777 642 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 MYSM1Q5VVJ2 828 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 CACTINQ8WUQ7 758 aaKnown RBP19.51■□□□□ 0.71
SYNE3-204ENST00000555759 RGS16O15492 202 aaPredicted RBP19.51■□□□□ 0.71
SYNE3-204ENST00000555759 CMA1P23946 247 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 MTHFSDQ2M296 383 aaKnown RBP19.51■□□□□ 0.71
SYNE3-204ENST00000555759 GDAP1L1Q96MZ0 367 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 ODF2LQ9ULJ1 636 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 ACEP12821 1306 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 ANKLE2Q86XL3 938 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 NCOA5Q9HCD5 579 aaKnown RBP19.51■□□□□ 0.71
SYNE3-204ENST00000555759 ZSWIM6Q9HCJ5 1215 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 LARSQ9P2J5 1176 aaKnown RBP19.51■□□□□ 0.71
SYNE3-204ENST00000555759 JAK2O60674 1132 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 SEC31AO94979 1220 aaKnown RBP19.51■□□□□ 0.71
SYNE3-204ENST00000555759 PFKFB1P16118 471 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 IRX4P78413 519 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 LONRF3Q496Y0 759 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 ARMC9Q7Z3E5 817 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 APBB1IPQ7Z5R6 666 aaPredicted RBP19.51■□□□□ 0.71
SYNE3-204ENST00000555759 PHF8Q9UPP1 1060 aa19.51■□□□□ 0.71
SYNE3-204ENST00000555759 NUTM2BA6NNL0 878 aaPredicted RBP19.5■□□□□ 0.71
SYNE3-204ENST00000555759 NUTM2EB1AL46 878 aaPredicted RBP19.5■□□□□ 0.71
SYNE3-204ENST00000555759 CUL4AQ13619 759 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 HHATQ5VTY9 493 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 DESI2Q9BSY9 194 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 MYO1CO00159 1063 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 KRT40Q6A162 431 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 MMS22LQ6ZRQ5 1243 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 TRMT2AQ8IZ69 625 aaKnown RBP19.5■□□□□ 0.71
SYNE3-204ENST00000555759 FBXO18Q8NFZ0 1043 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 NELFBQ8WX92 580 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 DDX21Q9NR30 783 aaKnown RBP eCLIP19.5■□□□□ 0.71
SYNE3-204ENST00000555759 TNFAIP3P21580 790 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 ERCC5P28715 1186 aaPredicted RBP19.5■□□□□ 0.71
SYNE3-204ENST00000555759 NRBP1Q9UHY1 535 aa19.5■□□□□ 0.71
SYNE3-204ENST00000555759 A0A1W2PQ27 194 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 A0A1W2PQ64 194 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 A0A1W2PQD8 194 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 SPOPO43791 374 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 RNASE9P60153 205 aaKnown RBP19.49■□□□□ 0.71
SYNE3-204ENST00000555759 KRT24Q2M2I5 525 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 CCDC170Q8IYT3 715 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 RRP36Q96EU6 259 aaKnown RBP19.49■□□□□ 0.71
SYNE3-204ENST00000555759 FAM227BQ96M60 508 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 TACO1Q9BSH4 297 aaKnown RBP19.49■□□□□ 0.71
SYNE3-204ENST00000555759 SYNCQ9H7C4 482 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 ANKIB1Q9P2G1 1089 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 FAN1Q9Y2M0 1017 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 SBNO2Q9Y2G9 1366 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 FLOT1O75955 427 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 PNMA6AP0CW24 399 aaPredicted RBP19.49■□□□□ 0.71
SYNE3-204ENST00000555759 EPB41P11171 864 aaKnown RBP19.49■□□□□ 0.71
SYNE3-204ENST00000555759 ACTR5Q9H9F9 607 aaPredicted RBP19.49■□□□□ 0.71
SYNE3-204ENST00000555759 ADGRL1O94910 1474 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 CETN3O15182 167 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 ATP1A2P50993 1020 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 PNOCQ13519 176 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 JARID2Q92833 1246 aaPredicted RBP19.49■□□□□ 0.71
SYNE3-204ENST00000555759 FAM114A2Q9NRY5 505 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 RXRAP19793 462 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 INF2Q27J81 1249 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 FBXO38Q6PIJ6 1188 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 DDX23Q9BUQ8 820 aaKnown RBP19.49■□□□□ 0.71
SYNE3-204ENST00000555759 TXNDC16Q9P2K2 825 aa19.49■□□□□ 0.71
SYNE3-204ENST00000555759 IKBKBO14920 756 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 NCBP1Q09161 790 aaKnown RBP19.48■□□□□ 0.71
SYNE3-204ENST00000555759 ZNF274Q96GC6 653 aaPredicted RBP19.48■□□□□ 0.71
SYNE3-204ENST00000555759 FAM13AO94988 1023 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 STK38LQ9Y2H1 464 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 ERBB4Q15303 1308 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 MAP3K5Q99683 1374 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 GPTP24298 496 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 TRIM4Q9C037 500 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 TRAPPC8Q9Y2L5 1435 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 BICC1Q9H694 974 aaKnown RBP19.48■□□□□ 0.71
SYNE3-204ENST00000555759 FBLN1P23142 703 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 TPD52P55327 224 aaPredicted RBP19.48■□□□□ 0.71
SYNE3-204ENST00000555759 TRMT44Q8IYL2 757 aaKnown RBP19.48■□□□□ 0.71
SYNE3-204ENST00000555759 STAG1Q8WVM7 1258 aa19.48■□□□□ 0.71
SYNE3-204ENST00000555759 MAGEB6P1A0A0J9YX57 407 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms