RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 TMEM39BQ9GZU3 492 aa12□□□□□ -0.49
NEK9-205ENST00000555405 ARPP21Q9UBL0 812 aaPredicted RBP12□□□□□ -0.49
NEK9-205ENST00000555405 CLEC11AQ9Y240 323 aa12□□□□□ -0.49
NEK9-205ENST00000555405 DDTLA6NHG4 134 aaPredicted RBP12□□□□□ -0.49
NEK9-205ENST00000555405 CCDC69A6NI79 296 aa12□□□□□ -0.49
NEK9-205ENST00000555405 GOLGA8BA8MQT2 603 aa12□□□□□ -0.49
NEK9-205ENST00000555405 LMOD1P29536 600 aaPredicted RBP12□□□□□ -0.49
NEK9-205ENST00000555405 SART3Q15020 963 aaKnown RBP12□□□□□ -0.49
NEK9-205ENST00000555405 ALX1Q15699 326 aa12□□□□□ -0.49
NEK9-205ENST00000555405 C12orf60Q5U649 245 aa12□□□□□ -0.49
NEK9-205ENST00000555405 DPY19L2Q6NUT2 758 aa12□□□□□ -0.49
NEK9-205ENST00000555405 TTC6Q86TZ1 520 aa12□□□□□ -0.49
NEK9-205ENST00000555405 CDAN1Q8IWY9 1227 aa12□□□□□ -0.49
NEK9-205ENST00000555405 CMTR1Q8N1G2 835 aaKnown RBP12□□□□□ -0.49
NEK9-205ENST00000555405 ZNF70Q9UC06 446 aaPredicted RBP12□□□□□ -0.49
NEK9-205ENST00000555405 SERPINA10Q9UK55 444 aa12□□□□□ -0.49
NEK9-205ENST00000555405 SCN9AQ15858 1988 aa12□□□□□ -0.49
NEK9-205ENST00000555405 DCAF8L1A6NGE4 600 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 SPDYE2BA6NHP3 402 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 WNT10BO00744 389 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 HMGB1P09429 215 aaKnown RBP11.99□□□□□ -0.49
NEK9-205ENST00000555405 SPDYE6P0CI01 402 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 SYNE3Q6ZMZ3 975 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 IQCA1Q86XH1 822 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 CSRNP1Q96S65 589 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 KRT23Q9C075 422 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 FZD1Q9UP38 647 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 GAKO14976 1311 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 CPLX1O14810 134 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 GDF11O95390 407 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 TOB2Q14106 344 aaPredicted RBP11.99□□□□□ -0.49
NEK9-205ENST00000555405 NBR1Q14596 966 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 WTAPQ15007 396 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 FAM163AQ96GL9 167 aaPredicted RBP11.99□□□□□ -0.49
NEK9-205ENST00000555405 TM6SF1Q9BZW5 370 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 EPB41L2O43491 1005 aaKnown RBP11.99□□□□□ -0.49
NEK9-205ENST00000555405 CDK8P49336 464 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 ANTXR2P58335 489 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 AGBL3Q8NEM8 1001 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 SMC3Q9UQE7 1217 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 COL4A5P29400 1685 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 MYO3BQ8WXR4 1341 aa11.99□□□□□ -0.49
NEK9-205ENST00000555405 KIF4BQ2VIQ3 1234 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 TICAM2Q86XR7 235 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 SNX21Q969T3 373 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 TTC14Q96N46 770 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 OSBPL5Q9H0X9 879 aaPredicted RBP11.98□□□□□ -0.49
NEK9-205ENST00000555405 CNNM2Q9H8M5 875 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 MB21D2Q8IYB1 491 aaPredicted RBP11.98□□□□□ -0.49
NEK9-205ENST00000555405 TRPM4Q8TD43 1214 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 FAM198AQ9UFP1 575 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 QSER1Q2KHR3 1735 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 MYH2Q9UKX2 1941 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 FZD9O00144 591 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 RAB3GAP1Q15042 981 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 ANKRD1Q15327 319 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 SHROOM1Q2M3G4 852 aaPredicted RBP11.98□□□□□ -0.49
NEK9-205ENST00000555405 GMLQ99445 158 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 SERPINB13Q9UIV8 391 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 SLC12A7Q9Y666 1083 aa11.98□□□□□ -0.49
NEK9-205ENST00000555405 TNKSO95271 1327 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 MCM2P49736 904 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 GUCY1B3Q02153 619 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 RASA3Q14644 834 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 IFIT1BQ5T764 474 aaKnown RBP11.97□□□□□ -0.49
NEK9-205ENST00000555405 ANGEL2Q5VTE6 544 aaKnown RBP11.97□□□□□ -0.49
NEK9-205ENST00000555405 BAZ2AQ9UIF9 1905 aaKnown RBP11.97□□□□□ -0.49
NEK9-205ENST00000555405 hCG_1642624A0A1W2PR95 340 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 CCDC84Q86UT8 332 aaPredicted RBP11.97□□□□□ -0.49
NEK9-205ENST00000555405 STAG1Q8WVM7 1258 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 KCNB2Q92953 911 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 VPS33BQ9H267 617 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 BRPF3Q9ULD4 1205 aa11.97□□□□□ -0.49
NEK9-205ENST00000555405 BAZ2BQ9UIF8 2168 aaKnown RBP11.97□□□□□ -0.49
NEK9-205ENST00000555405 VPS37CA5D8V6 355 aaPredicted RBP11.96□□□□□ -0.49
NEK9-205ENST00000555405 JAK2O60674 1132 aa11.96□□□□□ -0.49
NEK9-205ENST00000555405 ADD1P35611 737 aaKnown RBP11.96□□□□□ -0.49
NEK9-205ENST00000555405 TSGA10IPQ3SY00 556 aa11.96□□□□□ -0.49
NEK9-205ENST00000555405 HACL1Q9UJ83 578 aa11.96□□□□□ -0.49
NEK9-205ENST00000555405 ANGEL1Q9UNK9 670 aaKnown RBP11.96□□□□□ -0.49
NEK9-205ENST00000555405 GRIN3BO60391 1043 aa11.96□□□□□ -0.49
NEK9-205ENST00000555405 ZYXQ15942 572 aaKnown RBP11.96□□□□□ -0.49
NEK9-205ENST00000555405 GIMAP6Q6P9H5 292 aa11.96□□□□□ -0.49
NEK9-205ENST00000555405 FAM184AQ8NB25 1140 aa11.96□□□□□ -0.49
NEK9-205ENST00000555405 ZNF408Q9H9D4 720 aa11.96□□□□□ -0.49
NEK9-205ENST00000555405 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.96□□□□□ -0.49
NEK9-205ENST00000555405 DHX16O60231 1041 aaKnown RBP11.96□□□□□ -0.5
NEK9-205ENST00000555405 EXOSC10Q01780 885 aaKnown RBP11.96□□□□□ -0.5
NEK9-205ENST00000555405 GGA3Q9NZ52 723 aa11.96□□□□□ -0.5
NEK9-205ENST00000555405 GOLGA8AA7E2F4 631 aa11.95□□□□□ -0.5
NEK9-205ENST00000555405 AKR1B1P15121 316 aa11.95□□□□□ -0.5
NEK9-205ENST00000555405 HDLBPQ00341 1268 aaKnown RBP11.95□□□□□ -0.5
NEK9-205ENST00000555405 VAT1LQ9HCJ6 419 aa11.95□□□□□ -0.5
NEK9-205ENST00000555405 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.95□□□□□ -0.5
NEK9-205ENST00000555405 SNED1Q8TER0 1413 aa11.95□□□□□ -0.5
NEK9-205ENST00000555405 ZBTB43O43298 467 aa11.95□□□□□ -0.5
NEK9-205ENST00000555405 METAP2P50579 478 aaKnown RBP eCLIP11.95□□□□□ -0.5
NEK9-205ENST00000555405 PKP1Q13835 747 aa11.95□□□□□ -0.5
NEK9-205ENST00000555405 SH3BP5LQ7L8J4 393 aa11.95□□□□□ -0.5
NEK9-205ENST00000555405 ZSCAN10Q96SZ4 725 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms