RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 PLXNB2O15031 1838 aa12.09□□□□□ -0.47
SCFD1-215ENST00000555259 SLC5A1P13866 664 aa12.09□□□□□ -0.47
SCFD1-215ENST00000555259 MAFAQ8NHW3 353 aaPredicted RBP12.09□□□□□ -0.47
SCFD1-215ENST00000555259 LPIN2Q92539 896 aa12.09□□□□□ -0.47
SCFD1-215ENST00000555259 CDX2Q99626 313 aaPredicted RBP12.09□□□□□ -0.47
SCFD1-215ENST00000555259 XRCC5P13010 732 aaKnown RBP12.08□□□□□ -0.48
SCFD1-215ENST00000555259 SPP2Q13103 211 aa12.08□□□□□ -0.48
SCFD1-215ENST00000555259 PABPC4Q13310 644 aaKnown RBP eCLIP12.08□□□□□ -0.48
SCFD1-215ENST00000555259 LHX8Q68G74 356 aa12.08□□□□□ -0.48
SCFD1-215ENST00000555259 LBHD1Q9BQE6 289 aaPredicted RBP12.08□□□□□ -0.48
SCFD1-215ENST00000555259 ASCC2Q9H1I8 757 aaPredicted RBP12.08□□□□□ -0.48
SCFD1-215ENST00000555259 MORF4L1Q9UBU8 362 aa12.08□□□□□ -0.48
SCFD1-215ENST00000555259 LOC285556D6RIA3 1793 aa12.08□□□□□ -0.48
SCFD1-215ENST00000555259 GAKO14976 1311 aa12.07□□□□□ -0.48
SCFD1-215ENST00000555259 SALL1Q9NSC2 1324 aa12.07□□□□□ -0.48
SCFD1-215ENST00000555259 HMGCS2P54868 508 aa12.07□□□□□ -0.48
SCFD1-215ENST00000555259 CACNB2Q08289 660 aaPredicted RBP12.07□□□□□ -0.48
SCFD1-215ENST00000555259 ZNF280CQ8ND82 737 aa12.07□□□□□ -0.48
SCFD1-215ENST00000555259 SOCS4Q8WXH5 440 aa12.07□□□□□ -0.48
SCFD1-215ENST00000555259 DDX4Q9NQI0 724 aaKnown RBP12.07□□□□□ -0.48
SCFD1-215ENST00000555259 TBC1D12O60347 775 aa12.06□□□□□ -0.48
SCFD1-215ENST00000555259 PICALMQ13492 652 aa12.06□□□□□ -0.48
SCFD1-215ENST00000555259 NUDT12Q9BQG2 462 aa12.06□□□□□ -0.48
SCFD1-215ENST00000555259 SEMA6BQ9H3T3 888 aa12.06□□□□□ -0.48
SCFD1-215ENST00000555259 FAM196BA6NMK8 535 aa12.05□□□□□ -0.48
SCFD1-215ENST00000555259 EYA2O00167 538 aa12.05□□□□□ -0.48
SCFD1-215ENST00000555259 ZKSCAN1P17029 563 aaPredicted RBP12.05□□□□□ -0.48
SCFD1-215ENST00000555259 CCND3P30281 292 aaPredicted RBP12.05□□□□□ -0.48
SCFD1-215ENST00000555259 NCBP3Q53F19 620 aaKnown RBP12.05□□□□□ -0.48
SCFD1-215ENST00000555259 TRMT44Q8IYL2 757 aaKnown RBP12.05□□□□□ -0.48
SCFD1-215ENST00000555259 SYMPKQ92797 1274 aaKnown RBP12.05□□□□□ -0.48
SCFD1-215ENST00000555259 MYH2Q9UKX2 1941 aa12.05□□□□□ -0.48
SCFD1-215ENST00000555259 COL9A1P20849 921 aa12.05□□□□□ -0.48
SCFD1-215ENST00000555259 SH3D19Q5HYK7 790 aa12.05□□□□□ -0.48
SCFD1-215ENST00000555259 TBC1D2Q9BYX2 928 aa12.05□□□□□ -0.48
SCFD1-215ENST00000555259 OSBPL5Q9H0X9 879 aaPredicted RBP12.05□□□□□ -0.48
SCFD1-215ENST00000555259 GNL3LQ9NVN8 582 aaKnown RBP12.05□□□□□ -0.48
SCFD1-215ENST00000555259 DENND2AQ9ULE3 1009 aa12.05□□□□□ -0.48
SCFD1-215ENST00000555259 MAST2Q6P0Q8 1798 aa12.04□□□□□ -0.48
SCFD1-215ENST00000555259 SEMA3EO15041 775 aa12.04□□□□□ -0.48
SCFD1-215ENST00000555259 PEX10O60683 326 aa12.04□□□□□ -0.48
SCFD1-215ENST00000555259 CCL14Q16627 93 aa12.04□□□□□ -0.48
SCFD1-215ENST00000555259 GPRC5AQ8NFJ5 357 aa12.04□□□□□ -0.48
SCFD1-215ENST00000555259 MYLIPQ8WY64 445 aa12.04□□□□□ -0.48
SCFD1-215ENST00000555259 USP6NLQ92738 828 aa12.04□□□□□ -0.48
SCFD1-215ENST00000555259 FAM163AQ96GL9 167 aaPredicted RBP12.04□□□□□ -0.48
SCFD1-215ENST00000555259 SENP6Q9GZR1 1112 aaPredicted RBP12.04□□□□□ -0.48
SCFD1-215ENST00000555259 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.04□□□□□ -0.485e-6■■■□□ 17
SCFD1-215ENST00000555259 TXNRD2Q9NNW7 524 aa12.04□□□□□ -0.48
SCFD1-215ENST00000555259 BTDP43251 543 aa12.03□□□□□ -0.48
SCFD1-215ENST00000555259 PHKA1P46020 1223 aa12.03□□□□□ -0.48
SCFD1-215ENST00000555259 RFX5P48382 616 aaPredicted RBP12.03□□□□□ -0.48
SCFD1-215ENST00000555259 IRX3P78415 501 aaPredicted RBP12.03□□□□□ -0.48
SCFD1-215ENST00000555259 PDE3AQ14432 1141 aa12.03□□□□□ -0.48
SCFD1-215ENST00000555259 SHHQ15465 462 aa12.03□□□□□ -0.48
SCFD1-215ENST00000555259 ATG9AQ7Z3C6 839 aa12.03□□□□□ -0.48
SCFD1-215ENST00000555259 DZIP1Q86YF9 867 aaKnown RBP12.03□□□□□ -0.48
SCFD1-215ENST00000555259 WDR63Q8IWG1 891 aa12.03□□□□□ -0.48
SCFD1-215ENST00000555259 ZGPATQ8N5A5 531 aaKnown RBP12.03□□□□□ -0.48
SCFD1-215ENST00000555259 P2RX7Q99572 595 aaKnown RBP12.03□□□□□ -0.48
SCFD1-215ENST00000555259 TTYH1Q9H313 450 aaPredicted RBP12.03□□□□□ -0.48
SCFD1-215ENST00000555259 PRKAG2Q9UGJ0 569 aa12.03□□□□□ -0.48
SCFD1-215ENST00000555259 USP17L5A8MUK1 530 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 FOSL2P15408 326 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 MAPK4P31152 587 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 HOXA7P31268 230 aaPredicted RBP12.02□□□□□ -0.49
SCFD1-215ENST00000555259 CAP2P40123 477 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 RGS2P41220 211 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 ATN1P54259 1190 aaPredicted RBP12.02□□□□□ -0.49
SCFD1-215ENST00000555259 HERVK_113P62684 666 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 RRP1BQ14684 758 aaKnown RBP12.02□□□□□ -0.49
SCFD1-215ENST00000555259 ATP2B3Q16720 1220 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 C9orf50Q5SZB4 431 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 SLF2Q8IX21 1173 aa12.02□□□□□ -0.49
SCFD1-215ENST00000555259 NPM3O75607 178 aaKnown RBP12.01□□□□□ -0.49
SCFD1-215ENST00000555259 RHBDL3P58872 404 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 MTMR2Q13614 643 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 CCDC184Q52MB2 194 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 MORN1Q5T089 497 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 GPR142Q7Z601 462 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 APBA2Q99767 749 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 PORCNQ9H237 461 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 AS3MTQ9HBK9 375 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 RBPJLQ9UBG7 517 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 ABCF2Q9UG63 623 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 SALL2Q9Y467 1007 aaPredicted RBP12.01□□□□□ -0.49
SCFD1-215ENST00000555259 LTBP2Q14767 1821 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 MROH7-TTC4A0A0A0MT08 1334 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 FRMPD3Q5JV73 1810 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 ATAD5Q96QE3 1844 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 ZBTB22O15209 634 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 RTP1P59025 263 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 ERVK-9P63128 1117 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 ERVK-24P63145 666 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 SMAD3P84022 425 aaKnown RBP12.01□□□□□ -0.49
SCFD1-215ENST00000555259 Q3C1V9 767 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 USP44Q9H0E7 712 aa12.01□□□□□ -0.49
SCFD1-215ENST00000555259 GPR75-ASB3A0A0A6YYF3 556 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 TNFRSF10AO00220 468 aa12□□□□□ -0.49
SCFD1-215ENST00000555259 BACE1P56817 501 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms