RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 LRRFIP1Q32MZ4 808 aaKnown RBP17.12■□□□□ 0.33
SHMT2-217ENST00000555116 METTL16Q86W50 562 aaKnown RBP17.12■□□□□ 0.33
SHMT2-217ENST00000555116 SDR42E1Q8WUS8 393 aa17.12■□□□□ 0.33
SHMT2-217ENST00000555116 CNKSR2Q8WXI2 1034 aa17.12■□□□□ 0.33
SHMT2-217ENST00000555116 PHIPQ8WWQ0 1821 aa17.12■□□□□ 0.33
SHMT2-217ENST00000555116 HSPA1AP0DMV8 641 aaKnown RBP17.12■□□□□ 0.33
SHMT2-217ENST00000555116 HSPA1BP0DMV9 641 aaKnown RBP17.12■□□□□ 0.33
SHMT2-217ENST00000555116 NOL9Q5SY16 702 aaKnown RBP17.12■□□□□ 0.33
SHMT2-217ENST00000555116 AIDAQ96BJ3 306 aa17.12■□□□□ 0.33
SHMT2-217ENST00000555116 DCP1AQ9NPI6 582 aaPredicted RBP17.12■□□□□ 0.33
SHMT2-217ENST00000555116 SPDYE5A6NIY4 337 aa17.11■□□□□ 0.33
SHMT2-217ENST00000555116 ZBTB48P10074 688 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-217ENST00000555116 ZMYM1Q5SVZ6 1142 aa17.11■□□□□ 0.33
SHMT2-217ENST00000555116 FOXP4Q8IVH2 680 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-217ENST00000555116 OPTNQ96CV9 577 aa17.11■□□□□ 0.33
SHMT2-217ENST00000555116 STRBPQ96SI9 672 aaKnown RBP17.11■□□□□ 0.33
SHMT2-217ENST00000555116 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.11■□□□□ 0.33
SHMT2-217ENST00000555116 HERC5Q9UII4 1024 aaKnown RBP17.11■□□□□ 0.33
SHMT2-217ENST00000555116 M0R2C6 588 aa17.1■□□□□ 0.33
SHMT2-217ENST00000555116 DNAJC18Q9H819 358 aa17.1■□□□□ 0.33
SHMT2-217ENST00000555116 HLA-DOAP06340 250 aa17.1■□□□□ 0.33
SHMT2-217ENST00000555116 RRP1BQ14684 758 aaKnown RBP17.1■□□□□ 0.33
SHMT2-217ENST00000555116 SLC4A8Q2Y0W8 1093 aa17.1■□□□□ 0.33
SHMT2-217ENST00000555116 CENPQQ7L2Z9 268 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-217ENST00000555116 ERO1BQ86YB8 467 aa17.1■□□□□ 0.33
SHMT2-217ENST00000555116 SEC62Q99442 399 aaKnown RBP17.1■□□□□ 0.33
SHMT2-217ENST00000555116 ATP8A2Q9NTI2 1148 aa17.1■□□□□ 0.33
SHMT2-217ENST00000555116 MYH8P13535 1937 aa17.09■□□□□ 0.33
SHMT2-217ENST00000555116 TRIM6-TRIM34B2RNG4 842 aa17.09■□□□□ 0.33
SHMT2-217ENST00000555116 GPAA1O43292 621 aa17.09■□□□□ 0.33
SHMT2-217ENST00000555116 TICAM2Q86XR7 235 aa17.09■□□□□ 0.33
SHMT2-217ENST00000555116 REM2Q8IYK8 340 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-217ENST00000555116 SLC4A4Q9Y6R1 1079 aa17.09■□□□□ 0.33
SHMT2-217ENST00000555116 PTPRFP10586 1907 aa17.09■□□□□ 0.33
SHMT2-217ENST00000555116 CTNND1O60716 968 aaKnown RBP17.08■□□□□ 0.33
SHMT2-217ENST00000555116 TM4SF4P48230 202 aa17.08■□□□□ 0.33
SHMT2-217ENST00000555116 PLCD1P51178 756 aa17.08■□□□□ 0.33
SHMT2-217ENST00000555116 TTC6Q86TZ1 520 aa17.08■□□□□ 0.33
SHMT2-217ENST00000555116 SCYL3Q8IZE3 742 aa17.08■□□□□ 0.33
SHMT2-217ENST00000555116 OTUD5Q96G74 571 aa17.08■□□□□ 0.33
SHMT2-217ENST00000555116 EHD4Q9H223 541 aa17.08■□□□□ 0.33
SHMT2-217ENST00000555116 MCM9Q9NXL9 1143 aa17.08■□□□□ 0.33
SHMT2-217ENST00000555116 MANSC4A6NHS7 340 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-217ENST00000555116 EVX2Q03828 476 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 RILPL2Q969X0 211 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 FOXN1O15353 648 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 POLR3DP05423 398 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-217ENST00000555116 CYP2D6P10635 497 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 PPATQ06203 517 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 PPIL2Q13356 520 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 TTC22Q5TAA0 569 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 CRACR2BQ8N4Y2 399 aaPredicted RBP17.07■□□□□ 0.32
SHMT2-217ENST00000555116 CCDC136Q96JN2 1154 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 MS4A4AQ96JQ5 239 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 SERPINB13Q9UIV8 391 aa17.07■□□□□ 0.32
SHMT2-217ENST00000555116 GSG1L2A8MUP6 293 aa17.06■□□□□ 0.32
SHMT2-217ENST00000555116 CAP2P40123 477 aa17.06■□□□□ 0.32
SHMT2-217ENST00000555116 GABPAQ06546 454 aa17.06■□□□□ 0.32
SHMT2-217ENST00000555116 TESPA1A2RU30 521 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-217ENST00000555116 IRF6O14896 467 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 GSPT1P15170 499 aaKnown RBP17.05■□□□□ 0.32
SHMT2-217ENST00000555116 PTPRAP18433 802 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 SREBF2Q12772 1141 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 PICK1Q9NRD5 415 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 USP17L12C9JPN9 530 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 USP17L21D6R901 530 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 GNAT2P19087 354 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 INHBEP58166 350 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 JAG1P78504 1218 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 TATDN1Q6P1N9 297 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 GIMAP6Q6P9H5 292 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 CCDC129Q6ZRS4 1044 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 FAM227BQ96M60 508 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 BEGAINQ9BUH8 593 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 TRIM34Q9BYJ4 488 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 EPB41L4AQ9HCS5 686 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-217ENST00000555116 HELLSQ9NRZ9 838 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 RNF186Q9NXI6 227 aa17.05■□□□□ 0.32
SHMT2-217ENST00000555116 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-217ENST00000555116 CYP2D7A0A087X1C5 515 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 A0A0D9SFI3 127 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 SMIM22K7EJ46 135 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 SDSP20132 328 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 GTF2A2P52657 109 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 NMIQ13287 307 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-217ENST00000555116 C12orf60Q5U649 245 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 CTR9Q6PD62 1173 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 DDRGK1Q96HY6 314 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 KCNH4Q9UQ05 1017 aa17.04■□□□□ 0.32
SHMT2-217ENST00000555116 PATL2C9JE40 543 aaKnown RBP17.03■□□□□ 0.32
SHMT2-217ENST00000555116 CA12O43570 354 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 SHROOM1Q2M3G4 852 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-217ENST00000555116 BRI3BPQ8WY22 251 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 ZHX2Q9Y6X8 837 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 IGF2BP3O00425 579 aaKnown RBP eCLIP17.03■□□□□ 0.32
SHMT2-217ENST00000555116 FOXP2O15409 715 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 HSPA8P11142 646 aaKnown RBP17.03■□□□□ 0.32
SHMT2-217ENST00000555116 SHMT1P34896 483 aa17.03■□□□□ 0.32
SHMT2-217ENST00000555116 CTCFP49711 727 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-217ENST00000555116 SBK1Q52WX2 424 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms