RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 SCYL3Q8IZE3 742 aa12.92□□□□□ -0.34
SHMT2-213ENST00000554600 PTPN18Q99952 460 aa12.92□□□□□ -0.34
SHMT2-213ENST00000554600 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.92□□□□□ -0.341e-6■■□□□ 11.9
SHMT2-213ENST00000554600 DHX36Q9H2U1 1008 aaKnown RBP12.92□□□□□ -0.34
SHMT2-213ENST00000554600 R3HDMLQ9H3Y0 253 aa12.92□□□□□ -0.34
SHMT2-213ENST00000554600 PALD1Q9ULE6 856 aa12.92□□□□□ -0.34
SHMT2-213ENST00000554600 ZHX2Q9Y6X8 837 aa12.92□□□□□ -0.34
SHMT2-213ENST00000554600 ZNF532Q9HCE3 1301 aa12.91□□□□□ -0.34
SHMT2-213ENST00000554600 TESPA1A2RU30 521 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-213ENST00000554600 PHF20L1A8MW92 1017 aa12.91□□□□□ -0.34
SHMT2-213ENST00000554600 CTNND1O60716 968 aaKnown RBP12.91□□□□□ -0.34
SHMT2-213ENST00000554600 HLA-DOAP06340 250 aa12.91□□□□□ -0.34
SHMT2-213ENST00000554600 CRHR2Q13324 411 aa12.91□□□□□ -0.34
SHMT2-213ENST00000554600 TMED8Q6PL24 325 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-213ENST00000554600 HAUS7Q99871 368 aa12.91□□□□□ -0.34
SHMT2-213ENST00000554600 ECHDC1Q9NTX5 307 aa12.91□□□□□ -0.34
SHMT2-213ENST00000554600 PI4KBQ9UBF8 816 aa12.91□□□□□ -0.34
SHMT2-213ENST00000554600 MGAMO43451 1857 aa12.91□□□□□ -0.34
SHMT2-213ENST00000554600 TBC1D12O60347 775 aa12.9□□□□□ -0.34
SHMT2-213ENST00000554600 TSHZ3Q63HK5 1081 aa12.9□□□□□ -0.34
SHMT2-213ENST00000554600 CTU1Q7Z7A3 348 aaKnown RBP12.9□□□□□ -0.34
SHMT2-213ENST00000554600 FAM43AQ8N2R8 423 aa12.9□□□□□ -0.34
SHMT2-213ENST00000554600 CFHR5Q9BXR6 569 aa12.9□□□□□ -0.34
SHMT2-213ENST00000554600 CRNKL1Q9BZJ0 848 aaKnown RBP12.9□□□□□ -0.34
SHMT2-213ENST00000554600 ZFYVE28Q9HCC9 887 aa12.9□□□□□ -0.34
SHMT2-213ENST00000554600 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-213ENST00000554600 HERC5Q9UII4 1024 aaKnown RBP12.9□□□□□ -0.34
SHMT2-213ENST00000554600 SUPT16HQ9Y5B9 1047 aaKnown RBP12.9□□□□□ -0.34
SHMT2-213ENST00000554600 DDX60LQ5H9U9 1706 aaKnown RBP12.9□□□□□ -0.34
SHMT2-213ENST00000554600 CCDC85CA6NKD9 419 aa12.89□□□□□ -0.35
SHMT2-213ENST00000554600 BTBD19C9JJ37 291 aa12.89□□□□□ -0.35
SHMT2-213ENST00000554600 PTPRAP18433 802 aa12.89□□□□□ -0.35
SHMT2-213ENST00000554600 MAP3K10Q02779 954 aa12.89□□□□□ -0.35
SHMT2-213ENST00000554600 ANKRD45Q5TZF3 282 aa12.89□□□□□ -0.35
SHMT2-213ENST00000554600 GADL1Q6ZQY3 521 aa12.89□□□□□ -0.35
SHMT2-213ENST00000554600 CCDC84Q86UT8 332 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-213ENST00000554600 ZSWIM8A7E2V4 1837 aa12.89□□□□□ -0.35
SHMT2-213ENST00000554600 DOCK3Q8IZD9 2030 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 TRIM75PA6NK02 468 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 CXCL11O14625 94 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 POLR3DP05423 398 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-213ENST00000554600 ADD2P35612 726 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 SLFNL1Q499Z3 407 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 NOM1Q5C9Z4 860 aaKnown RBP12.88□□□□□ -0.35
SHMT2-213ENST00000554600 ZSCAN25Q6NSZ9 544 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 FOXP4Q8IVH2 680 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-213ENST00000554600 EXOC6Q8TAG9 804 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 RIOK1Q9BRS2 568 aaKnown RBP12.88□□□□□ -0.35
SHMT2-213ENST00000554600 ARMT1Q9H993 441 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 KCNH4Q9UQ05 1017 aa12.88□□□□□ -0.35
SHMT2-213ENST00000554600 TNRC18O15417 2968 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-213ENST00000554600 LOC285556D6RIA3 1793 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 TCRBV5S4A2TA0A5A2 114 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 ERC2O15083 957 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 MBD4O95243 580 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 CAP2P40123 477 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 SP3Q02447 781 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 AAMPQ13685 434 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 TTC6Q86TZ1 520 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 LCORLQ8N3X6 602 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 CD99L2Q8TCZ2 262 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 SDR42E1Q8WUS8 393 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 ERO1AQ96HE7 468 aa12.87□□□□□ -0.35
SHMT2-213ENST00000554600 PDHXO00330 501 aa12.86□□□□□ -0.35
SHMT2-213ENST00000554600 ECM2O94769 699 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-213ENST00000554600 GDF11O95390 407 aa12.86□□□□□ -0.35
SHMT2-213ENST00000554600 HDAC1Q13547 482 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-213ENST00000554600 RRP1BQ14684 758 aaKnown RBP12.86□□□□□ -0.35
SHMT2-213ENST00000554600 FASTKD5Q7L8L6 764 aaKnown RBP12.86□□□□□ -0.35
SHMT2-213ENST00000554600 ANKRD23Q86SG2 305 aa12.86□□□□□ -0.35
SHMT2-213ENST00000554600 OTUD7AQ8TE49 926 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-213ENST00000554600 GCC1Q96CN9 775 aa12.86□□□□□ -0.35
SHMT2-213ENST00000554600 RWDD1Q9H446 243 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-213ENST00000554600 MCM9Q9NXL9 1143 aa12.86□□□□□ -0.35
SHMT2-213ENST00000554600 AFG3L2Q9Y4W6 797 aa12.86□□□□□ -0.35
SHMT2-213ENST00000554600 TRIM17Q9Y577 477 aa12.86□□□□□ -0.35
SHMT2-213ENST00000554600 KIAA0100Q14667 2235 aaKnown RBP12.86□□□□□ -0.35
SHMT2-213ENST00000554600 TTC41PQ6P2S7 1318 aa12.86□□□□□ -0.35
SHMT2-213ENST00000554600 A0A0G2JLL6 359 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-213ENST00000554600 USP17L5A8MUK1 530 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 CHGBP05060 677 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 ASNSP08243 561 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 MX1P20591 662 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 IRX6P78412 446 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-213ENST00000554600 SPP2Q13103 211 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 UBE3CQ15386 1083 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 B4GALNT3Q6L9W6 998 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 PRRT2Q7Z6L0 340 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-213ENST00000554600 KBTBD3Q8NAB2 608 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 DDRGK1Q96HY6 314 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 DNAJC18Q9H819 358 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 AS3MTQ9HBK9 375 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 ZCCHC17Q9NP64 241 aaKnown RBP12.85□□□□□ -0.35
SHMT2-213ENST00000554600 SERPINB13Q9UIV8 391 aa12.85□□□□□ -0.35
SHMT2-213ENST00000554600 PRKAB2O43741 272 aa12.84□□□□□ -0.35
SHMT2-213ENST00000554600 TLR2O60603 784 aa12.84□□□□□ -0.35
SHMT2-213ENST00000554600 GLRX3O76003 335 aaKnown RBP12.84□□□□□ -0.35
SHMT2-213ENST00000554600 KIF22Q14807 665 aa12.84□□□□□ -0.35
SHMT2-213ENST00000554600 PKN2Q16513 984 aaKnown RBP12.84□□□□□ -0.35
SHMT2-213ENST00000554600 AMOTL1Q8IY63 956 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms