RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 PLPPR2Q96GM1 343 aa5.75□□□□□ -1.49
VRK1-202ENST00000553683 SSU72Q9NP77 194 aaKnown RBP5.75□□□□□ -1.49
VRK1-202ENST00000553683 PICK1Q9NRD5 415 aa5.75□□□□□ -1.49
VRK1-202ENST00000553683 PCDHB5Q9Y5E4 795 aa5.75□□□□□ -1.49
VRK1-202ENST00000553683 SCO2A0A1W2PP80 73 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 FAM221AA4D161 298 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 IGF2BP3O00425 579 aaKnown RBP eCLIP5.74□□□□□ -1.49
VRK1-202ENST00000553683 CYP26A1O43174 497 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 CILPO75339 1184 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 LRIG2O94898 1065 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 PRNPP04156 253 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 SPINK2P20155 84 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 PDE4BQ07343 736 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 WIPI1Q5MNZ9 446 aaPredicted RBP5.74□□□□□ -1.49
VRK1-202ENST00000553683 HID1Q8IV36 788 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 ADAM30Q9UKF2 790 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 CCDC9Q9Y3X0 531 aaKnown RBP5.74□□□□□ -1.49
VRK1-202ENST00000553683 PRR36Q9H6K5 1346 aa5.74□□□□□ -1.49
VRK1-202ENST00000553683 FAM170BA6NMN3 283 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 GBP2P32456 591 aaPredicted RBP5.73□□□□□ -1.49
VRK1-202ENST00000553683 SEPT6Q14141 434 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 MAP3K11Q16584 847 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 MSMPQ1L6U9 139 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 LDLRAD1Q5T700 205 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 ZNF765Q7L2R6 523 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 MFSD2AQ8NA29 543 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 RGS22Q8NE09 1264 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 COX4I2Q96KJ9 171 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 DUSP23Q9BVJ7 150 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 PCMTD2Q9NV79 361 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 TLR6Q9Y2C9 796 aa5.73□□□□□ -1.49
VRK1-202ENST00000553683 BPNT1O95861 308 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 PF4P02776 101 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 FAM87AP0C7U9 286 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 MPP2Q14168 576 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.72□□□□□ -1.49
VRK1-202ENST00000553683 MRPL41Q8IXM3 137 aaKnown RBP5.72□□□□□ -1.49
VRK1-202ENST00000553683 LRRC3Q9BY71 257 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 FOXQ1Q9C009 403 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 PRDM10Q9NQV6 1147 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 BSDC1Q9NW68 430 aaPredicted RBP5.72□□□□□ -1.49
VRK1-202ENST00000553683 GTF2IRD1Q9UHL9 959 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 CSADQ9Y600 493 aa5.72□□□□□ -1.49
VRK1-202ENST00000553683 GREM1O60565 184 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 MED26O95402 600 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 GARTP22102 1010 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 ETF1P62495 437 aaKnown RBP5.71□□□□□ -1.5
VRK1-202ENST00000553683 CDK5R2Q13319 367 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 SLBPQ14493 270 aaKnown RBP eCLIP5.71□□□□□ -1.5
VRK1-202ENST00000553683 TMEM201Q5SNT2 666 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 SLC6A19Q695T7 634 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 ZNF746Q6NUN9 644 aaPredicted RBP5.71□□□□□ -1.5
VRK1-202ENST00000553683 FAM196AQ6ZSG2 479 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 C22orf34Q6ZV56 151 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 TMEM87AQ8NBN3 555 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 MISP3Q96FF7 219 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 BACH2Q9BYV9 841 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 KBTBD4Q9NVX7 518 aa5.71□□□□□ -1.5
VRK1-202ENST00000553683 SUPT16HQ9Y5B9 1047 aaKnown RBP5.71□□□□□ -1.5
VRK1-202ENST00000553683 PRAMEF27A3QJZ7 478 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 SCAMP3O14828 347 aaKnown RBP5.7□□□□□ -1.5
VRK1-202ENST00000553683 CST3P01034 146 aaPredicted RBP5.7□□□□□ -1.5
VRK1-202ENST00000553683 SSTR4P31391 388 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 GRK4P32298 578 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 ZNF76P36508 570 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 EIF4A3P38919 411 aaKnown RBP5.7□□□□□ -1.5
VRK1-202ENST00000553683 ARMCX6Q7L4S7 300 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 FAM214BQ7L5A3 538 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 SHISA5Q8N114 240 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 STK11IPQ8N1F8 1099 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 GGT7Q9UJ14 662 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 MAPK8IP1Q9UQF2 711 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 SNX11Q9Y5W9 270 aa5.7□□□□□ -1.5
VRK1-202ENST00000553683 WNT11O96014 354 aa5.69□□□□□ -1.5
VRK1-202ENST00000553683 F13A1P00488 732 aa5.69□□□□□ -1.5
VRK1-202ENST00000553683 SNAP47Q5SQN1 464 aa5.69□□□□□ -1.5
VRK1-202ENST00000553683 BNC2Q6ZN30 1099 aaPredicted RBP5.69□□□□□ -1.5
VRK1-202ENST00000553683 NBPF11Q86T75 865 aa5.69□□□□□ -1.5
VRK1-202ENST00000553683 VSIG10LQ86VR7 867 aa5.69□□□□□ -1.5
VRK1-202ENST00000553683 MCATQ8IVS2 390 aaKnown RBP5.69□□□□□ -1.5
VRK1-202ENST00000553683 GOLM1Q8NBJ4 401 aa5.69□□□□□ -1.5
VRK1-202ENST00000553683 JARID2Q92833 1246 aaPredicted RBP5.69□□□□□ -1.5
VRK1-202ENST00000553683 FBXL18Q96ME1 805 aa5.69□□□□□ -1.5
VRK1-202ENST00000553683 LGR6Q9HBX8 967 aa5.69□□□□□ -1.5
VRK1-202ENST00000553683 ATE1O95260 518 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 PGRP06401 933 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 HOXA10P31260 410 aaPredicted RBP5.68□□□□□ -1.5
VRK1-202ENST00000553683 CDK8P49336 464 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 FANCCQ00597 558 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 CWF19L2Q2TBE0 894 aaKnown RBP5.68□□□□□ -1.5
VRK1-202ENST00000553683 FBXL19Q6PCT2 694 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 REC114Q7Z4M0 266 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 TOP6BLQ8N6T0 577 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 NETO1Q8TDF5 533 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 TMEM87BQ96K49 555 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 NT5C1AQ9BXI3 368 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 FBRSQ9HAH7 460 aa5.68□□□□□ -1.5
VRK1-202ENST00000553683 ZC3H7BQ9UGR2 993 aaKnown RBP5.68□□□□□ -1.5
VRK1-202ENST00000553683 TMEM265A0A087WTH1 108 aa5.67□□□□□ -1.5
VRK1-202ENST00000553683 MINDY4BA8MYZ0 360 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms