RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 PHKA1P46020 1223 aa16.17■□□□□ 0.18
VPS29-211ENST00000553128 HMGCS2P54868 508 aa16.17■□□□□ 0.18
VPS29-211ENST00000553128 SPP2Q13103 211 aa16.17■□□□□ 0.18
VPS29-211ENST00000553128 RRP1BQ14684 758 aaKnown RBP16.17■□□□□ 0.18
VPS29-211ENST00000553128 PROCA1Q8NCQ7 364 aaPredicted RBP16.17■□□□□ 0.18
VPS29-211ENST00000553128 ASCC2Q9H1I8 757 aaPredicted RBP16.17■□□□□ 0.18
VPS29-211ENST00000553128 SALL1Q9NSC2 1324 aa16.17■□□□□ 0.18
VPS29-211ENST00000553128 COL2A1P02458 1487 aaPredicted RBP16.16■□□□□ 0.18
VPS29-211ENST00000553128 NCBP3Q53F19 620 aaKnown RBP16.16■□□□□ 0.18
VPS29-211ENST00000553128 LOC285556D6RIA3 1793 aa16.15■□□□□ 0.18
VPS29-211ENST00000553128 GCLCP48506 637 aaPredicted RBP16.15■□□□□ 0.18
VPS29-211ENST00000553128 LHX8Q68G74 356 aa16.15■□□□□ 0.18
VPS29-211ENST00000553128 FAM109BQ6ICB4 259 aaPredicted RBP16.15■□□□□ 0.18
VPS29-211ENST00000553128 USP44Q9H0E7 712 aa16.15■□□□□ 0.18
VPS29-211ENST00000553128 MYH2Q9UKX2 1941 aa16.14■□□□□ 0.17
VPS29-211ENST00000553128 CCND3P30281 292 aaPredicted RBP16.14■□□□□ 0.17
VPS29-211ENST00000553128 ADORA1P30542 326 aa16.14■□□□□ 0.17
VPS29-211ENST00000553128 BTDP43251 543 aa16.14■□□□□ 0.17
VPS29-211ENST00000553128 CACNB2Q08289 660 aaPredicted RBP16.14■□□□□ 0.17
VPS29-211ENST00000553128 ATP2B3Q16720 1220 aa16.14■□□□□ 0.17
VPS29-211ENST00000553128 ZNF280CQ8ND82 737 aa16.14■□□□□ 0.17
VPS29-211ENST00000553128 SIL1Q9H173 461 aa16.14■□□□□ 0.17
VPS29-211ENST00000553128 TXNRD2Q9NNW7 524 aa16.14■□□□□ 0.17
VPS29-211ENST00000553128 RHBDL3P58872 404 aa16.13■□□□□ 0.17
VPS29-211ENST00000553128 CCL14Q16627 93 aa16.13■□□□□ 0.17
VPS29-211ENST00000553128 ZNF384Q8TF68 577 aa16.13■□□□□ 0.17
VPS29-211ENST00000553128 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.13■□□□□ 0.17
VPS29-211ENST00000553128 MORF4L1Q9UBU8 362 aa16.13■□□□□ 0.17
VPS29-211ENST00000553128 DENND2AQ9ULE3 1009 aa16.13■□□□□ 0.17
VPS29-211ENST00000553128 TBC1D12O60347 775 aa16.12■□□□□ 0.17
VPS29-211ENST00000553128 DZIP1Q86YF9 867 aaKnown RBP16.12■□□□□ 0.17
VPS29-211ENST00000553128 P2RX7Q99572 595 aaKnown RBP16.12■□□□□ 0.17
VPS29-211ENST00000553128 PRDM6Q9NQX0 595 aa16.12■□□□□ 0.17
VPS29-211ENST00000553128 GNL3LQ9NVN8 582 aaKnown RBP16.12■□□□□ 0.17
VPS29-211ENST00000553128 RASGRF1Q13972 1273 aa16.11■□□□□ 0.17
VPS29-211ENST00000553128 SH3D19Q5HYK7 790 aa16.11■□□□□ 0.17
VPS29-211ENST00000553128 POTEEQ6S8J3 1075 aa16.11■□□□□ 0.17
VPS29-211ENST00000553128 MRPL50Q8N5N7 158 aaKnown RBP16.11■□□□□ 0.17
VPS29-211ENST00000553128 FAM163AQ96GL9 167 aaPredicted RBP16.11■□□□□ 0.17
VPS29-211ENST00000553128 CDX2Q99626 313 aaPredicted RBP16.11■□□□□ 0.17
VPS29-211ENST00000553128 OSBPL5Q9H0X9 879 aaPredicted RBP16.11■□□□□ 0.17
VPS29-211ENST00000553128 ABCF2Q9UG63 623 aa16.11■□□□□ 0.17
VPS29-211ENST00000553128 MROH7-TTC4A0A0A0MT08 1334 aa16.11■□□□□ 0.17
VPS29-211ENST00000553128 XRCC5P13010 732 aaKnown RBP16.1■□□□□ 0.17
VPS29-211ENST00000553128 ZKSCAN1P17029 563 aaPredicted RBP16.1■□□□□ 0.17
VPS29-211ENST00000553128 CAP2P40123 477 aa16.1■□□□□ 0.17
VPS29-211ENST00000553128 JAG1P78504 1218 aa16.1■□□□□ 0.17
VPS29-211ENST00000553128 PABPC4Q13310 644 aaKnown RBP eCLIP16.1■□□□□ 0.17
VPS29-211ENST00000553128 Q3C1V9 767 aa16.1■□□□□ 0.17
VPS29-211ENST00000553128 CCDC102BQ68D86 513 aa16.1■□□□□ 0.17
VPS29-211ENST00000553128 USP6NLQ92738 828 aa16.1■□□□□ 0.17
VPS29-211ENST00000553128 NUDT12Q9BQG2 462 aa16.1■□□□□ 0.17
VPS29-211ENST00000553128 PORCNQ9H237 461 aa16.1■□□□□ 0.17
VPS29-211ENST00000553128 SEMA3EO15041 775 aa16.09■□□□□ 0.17
VPS29-211ENST00000553128 MECOMQ03112 1051 aa16.09■□□□□ 0.17
VPS29-211ENST00000553128 MTMR2Q13614 643 aa16.09■□□□□ 0.17
VPS29-211ENST00000553128 SHROOM1Q2M3G4 852 aaPredicted RBP16.09■□□□□ 0.17
VPS29-211ENST00000553128 ZNF697Q5TEC3 545 aa16.09■□□□□ 0.17
VPS29-211ENST00000553128 SENP6Q9GZR1 1112 aaPredicted RBP16.09■□□□□ 0.17
VPS29-211ENST00000553128 CEP126Q9P2H0 1117 aa16.09■□□□□ 0.17
VPS29-211ENST00000553128 RBPJLQ9UBG7 517 aa16.09■□□□□ 0.17
VPS29-211ENST00000553128 ATAD5Q96QE3 1844 aa16.08■□□□□ 0.17
VPS29-211ENST00000553128 GPR75-ASB3A0A0A6YYF3 556 aa16.08■□□□□ 0.16
VPS29-211ENST00000553128 USP17L5A8MUK1 530 aa16.08■□□□□ 0.16
VPS29-211ENST00000553128 ATN1P54259 1190 aaPredicted RBP16.08■□□□□ 0.16
VPS29-211ENST00000553128 HERVK_113P62684 666 aa16.08■□□□□ 0.16
VPS29-211ENST00000553128 IRX3P78415 501 aaPredicted RBP16.08■□□□□ 0.16
VPS29-211ENST00000553128 MORN1Q5T089 497 aa16.08■□□□□ 0.16
VPS29-211ENST00000553128 GPRC5AQ8NFJ5 357 aa16.08■□□□□ 0.16
VPS29-211ENST00000553128 MAFAQ8NHW3 353 aaPredicted RBP16.08■□□□□ 0.16
VPS29-211ENST00000553128 SOCS4Q8WXH5 440 aa16.08■□□□□ 0.16
VPS29-211ENST00000553128 SEMA6BQ9H3T3 888 aa16.08■□□□□ 0.16
VPS29-211ENST00000553128 PA2G4Q9UQ80 394 aaKnown RBP16.08■□□□□ 0.16
VPS29-211ENST00000553128 MAST2Q6P0Q8 1798 aa16.08■□□□□ 0.16
VPS29-211ENST00000553128 CIAO1O76071 339 aa16.07■□□□□ 0.16
VPS29-211ENST00000553128 TIMM10P62072 90 aa16.07■□□□□ 0.16
VPS29-211ENST00000553128 GPR142Q7Z601 462 aa16.07■□□□□ 0.16
VPS29-211ENST00000553128 ZGPATQ8N5A5 531 aaKnown RBP16.07■□□□□ 0.16
VPS29-211ENST00000553128 MYLIPQ8WY64 445 aa16.07■□□□□ 0.16
VPS29-211ENST00000553128 FLRT1Q9NZU1 646 aa16.07■□□□□ 0.16
VPS29-211ENST00000553128 NPM3O75607 178 aaKnown RBP16.06■□□□□ 0.16
VPS29-211ENST00000553128 HOXA7P31268 230 aaPredicted RBP16.06■□□□□ 0.16
VPS29-211ENST00000553128 BACE1P56817 501 aa16.06■□□□□ 0.16
VPS29-211ENST00000553128 SHHQ15465 462 aa16.06■□□□□ 0.16
VPS29-211ENST00000553128 C9orf50Q5SZB4 431 aa16.06■□□□□ 0.16
VPS29-211ENST00000553128 SLF2Q8IX21 1173 aa16.06■□□□□ 0.16
VPS29-211ENST00000553128 LBHD1Q9BQE6 289 aaPredicted RBP16.06■□□□□ 0.16
VPS29-211ENST00000553128 TBC1D2Q9BYX2 928 aa16.06■□□□□ 0.16
VPS29-211ENST00000553128 TTYH1Q9H313 450 aaPredicted RBP16.06■□□□□ 0.16
VPS29-211ENST00000553128 FRMPD3Q5JV73 1810 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 ZBTB22O15209 634 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 MAPK4P31152 587 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 RGS2P41220 211 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 ERVK-9P63128 1117 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 ERVK-24P63145 666 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 PDE3AQ14432 1141 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 PI16Q6UXB8 463 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 TRMT44Q8IYL2 757 aaKnown RBP16.05■□□□□ 0.16
VPS29-211ENST00000553128 PAGR1Q9BTK6 254 aa16.05■□□□□ 0.16
VPS29-211ENST00000553128 WDR18Q9BV38 432 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms