RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TOB1P50616 345 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CCDC57Q2TAC2 916 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 ICE2Q659A1 982 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CYB5R4Q7L1T6 521 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 FCHSD1Q86WN1 690 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CCDC102AQ96A19 550 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 FAM204AQ9H8W3 233 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CEP126Q9P2H0 1117 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 HDAC6Q9UBN7 1215 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 LTN1O94822 1766 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 DIP2AQ14689 1571 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CCP110O43303 1012 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 SYF2O95926 243 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 FXR1P51114 621 aaKnown RBP eCLIP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 GTF2A1P52655 376 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CASP7P55210 303 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 NR1I3Q14994 352 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 TTC39AQ5SRH9 613 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CMTR1Q8N1G2 835 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 ALG1Q9BT22 464 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 SERTAD1Q9UHV2 236 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 RAB21Q9UL25 225 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 JRKLQ9Y4A0 524 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 A0A087X0B3 334 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 ENC1O14682 589 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 POLR2DO15514 142 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 RNF113AO15541 343 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CBFA2T2O43439 604 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 SRGAP2O75044 1071 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 IDH1O75874 414 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 USP5P45974 858 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 FOXO4P98177 505 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 BRD3Q15059 726 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 RABL6Q3YEC7 729 aaPredicted RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 RRP12Q5JTH9 1297 aaKnown RBP5.54□□□□□ -1.52
LIMA1-214ENST00000552783 JAKMIP3Q5VZ66 844 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 KLHL10Q6JEL2 608 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 BRAPQ7Z569 592 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 ARHGEF25Q86VW2 580 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CCDC82Q8N4S0 544 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 KAT2BQ92831 832 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 POLD4Q9HCU8 107 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 HELLSQ9NRZ9 838 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 CDC23Q9UJX2 597 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 MYH8P13535 1937 aa5.54□□□□□ -1.52
LIMA1-214ENST00000552783 ZC3H4Q9UPT8 1303 aaKnown RBP5.53□□□□□ -1.52
LIMA1-214ENST00000552783 MYBL2P10244 700 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 CASP14P31944 242 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 HSPA2P54652 639 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 ERVK-24P63145 666 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 DPYDQ12882 1025 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 OLFM4Q6UX06 510 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 NFXL1Q6ZNB6 911 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 HDXQ7Z353 690 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 MICU3Q86XE3 530 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 TBC1D10CQ8IV04 446 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 MSANTD4Q8NCY6 345 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 FAM217BQ9NTX9 383 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-214ENST00000552783 RAI14Q9P0K7 980 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 KCNJ14Q9UNX9 436 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 SLIT1O75093 1534 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 SRCAPQ6ZRS2 3230 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 A0A1B0GUL7 405 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 FAM205CA6NFA0 338 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 BTBD18B2RXH4 712 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 CCDC175P0C221 793 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 MAGEA9P43362 315 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 MRPS25P82663 173 aaKnown RBP5.53□□□□□ -1.52
LIMA1-214ENST00000552783 TRDNQ13061 729 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 KIF4BQ2VIQ3 1234 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 CCDC102BQ68D86 513 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 LEKR1Q6ZMV7 388 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 HNRNPLLQ8WVV9 542 aaKnown RBP5.53□□□□□ -1.52
LIMA1-214ENST00000552783 STAMQ92783 540 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 SLC52A2Q9HAB3 445 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 CNNM1Q9NRU3 951 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 CWC15Q9P013 229 aaKnown RBP5.53□□□□□ -1.52
LIMA1-214ENST00000552783 TACC3Q9Y6A5 838 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 C5P01031 1676 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 WNT7AO00755 349 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 RNF40O75150 1001 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 GYPCP04921 128 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 ARHGAP25P42331 645 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 SARSP49591 514 aaKnown RBP5.53□□□□□ -1.52
LIMA1-214ENST00000552783 CORO7P57737 925 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 NR5A1Q13285 461 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 POSTNQ15063 836 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 TTC19Q6DKK2 380 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-214ENST00000552783 TTLL7Q6ZT98 887 aa5.53□□□□□ -1.52
LIMA1-214ENST00000552783 UBR1Q8IWV7 1749 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 UBN2Q6ZU65 1347 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 LMO7Q8WWI1 1683 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 A0A1B0GTH6 734 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 FAM237AA0A1B0GTK4 181 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 AKR1B15C9JRZ8 316 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 RPS6KA5O75582 802 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 PRPF6O94906 941 aaKnown RBP5.52□□□□□ -1.53
LIMA1-214ENST00000552783 MORC3Q14149 939 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 NTRK3Q16288 839 aa5.52□□□□□ -1.53
LIMA1-214ENST00000552783 TTC31Q49AM3 519 aaPredicted RBP5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms