RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 UPK3BL1B0FP48 263 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 UPK3BL2E5RIL1 263 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 LILRB5O75023 590 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 ACRP10323 421 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 ARSHQ5FYA8 562 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 TMEM201Q5SNT2 666 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 LCE2CQ5TA81 110 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 MRM1Q6IN84 353 aaKnown RBP8.83□□□□□ -1
LIMA1-210ENST00000552045 UNC5AQ6ZN44 842 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 SPATC1Q76KD6 591 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 KLHL23Q8NBE8 558 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 ZNF669Q96BR6 464 aaPredicted RBP8.83□□□□□ -1
LIMA1-210ENST00000552045 COL25A1Q9BXS0 654 aaPredicted RBP8.83□□□□□ -1
LIMA1-210ENST00000552045 PFDN2Q9UHV9 154 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 ZMYM5Q9UJ78 669 aa8.83□□□□□ -1
LIMA1-210ENST00000552045 DCDC2CA8MYV0 355 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 TM4SF5O14894 197 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 PPP1R12AO14974 1030 aaPredicted RBP8.82□□□□□ -1
LIMA1-210ENST00000552045 DIAPH1O60610 1272 aaKnown RBP8.82□□□□□ -1
LIMA1-210ENST00000552045 DNAJA2O60884 412 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 SUZ12Q15022 739 aaKnown RBP8.82□□□□□ -1
LIMA1-210ENST00000552045 ZYXQ15942 572 aaKnown RBP8.82□□□□□ -1
LIMA1-210ENST00000552045 LCE2AQ5TA79 106 aaPredicted RBP8.82□□□□□ -1
LIMA1-210ENST00000552045 CDCP2Q5VXM1 449 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 MSL1Q68DK7 614 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 C16orf86Q6ZW13 317 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 NLRC3Q7RTR2 1065 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 TMX1Q9H3N1 280 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 CNNM2Q9H8M5 875 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 COL4A3BPQ9Y5P4 624 aa8.82□□□□□ -1
LIMA1-210ENST00000552045 LTBP3Q9NS15 1303 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 M0R082 166 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 TNFRSF10CO14798 259 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 GYS2P54840 703 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 ANAPC15P60006 121 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 SSRP1Q08945 709 aaKnown RBP8.81□□□□□ -1
LIMA1-210ENST00000552045 SETDB1Q15047 1291 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 ZC3H12AQ5D1E8 599 aaKnown RBP8.81□□□□□ -1
LIMA1-210ENST00000552045 RNFT1Q5M7Z0 435 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 C8orf86Q6ZUL3 223 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 EEPD1Q7L9B9 569 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 C12orf40Q86WS4 652 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 ZNF417Q8TAU3 575 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 ZNF587Q96SQ5 575 aaPredicted RBP8.81□□□□□ -1
LIMA1-210ENST00000552045 USP26Q9BXU7 913 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 ADAM30Q9UKF2 790 aa8.81□□□□□ -1
LIMA1-210ENST00000552045 LOC100289279A0A1B0GTE1 492 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 PRAMEF27A3QJZ7 478 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 NLRP12P59046 1061 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 NCAPHQ15003 741 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 HP1BP3Q5SSJ5 553 aaPredicted RBP8.8□□□□□ -1
LIMA1-210ENST00000552045 VHLLQ6RSH7 139 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 C1orf229Q6ZS94 237 aaPredicted RBP8.8□□□□□ -1
LIMA1-210ENST00000552045 SLC9A7Q96T83 725 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 FEZ1Q99689 392 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 PHAXQ9H814 394 aaKnown RBP8.8□□□□□ -1
LIMA1-210ENST00000552045 PCDH12Q9NPG4 1184 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 PCDHGC5Q9Y5F6 944 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 PTCH2Q9Y6C5 1203 aa8.8□□□□□ -1
LIMA1-210ENST00000552045 PGRP06401 933 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 GRK4P32298 578 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 GMPRP36959 345 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 KRT76Q01546 638 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 SRSF11Q05519 484 aaKnown RBP8.79□□□□□ -1
LIMA1-210ENST00000552045 RING1Q06587 406 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 GALNT11Q8NCW6 608 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 WDR18Q9BV38 432 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 KLHL3Q9UH77 587 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 CSADQ9Y600 493 aa8.79□□□□□ -1
LIMA1-210ENST00000552045 AOC2O75106 756 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 RAB11FIP3O75154 756 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 SLFN14P0C7P3 912 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 TKFCQ3LXA3 575 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 TAF7LQ5H9L4 462 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 CHSY3Q70JA7 882 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 ILDR2Q71H61 639 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 MAP4K3Q8IVH8 894 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 ACDQ96AP0 544 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 ACSF2Q96CM8 615 aaPredicted RBP8.78□□□□□ -1
LIMA1-210ENST00000552045 WNT10AQ9GZT5 417 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 PRDM6Q9NQX0 595 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 PCDHB10Q9UN67 800 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 HIF3AQ9Y2N7 669 aa8.78□□□□□ -1
LIMA1-210ENST00000552045 CHURC1-FNTBB4DL54 471 aa8.77□□□□□ -1.01
LIMA1-210ENST00000552045 DDX3YO15523 660 aaKnown RBP8.77□□□□□ -1.01
LIMA1-210ENST00000552045 ADAM11O75078 769 aa8.77□□□□□ -1.01
LIMA1-210ENST00000552045 DLGAP3O95886 979 aa8.77□□□□□ -1.01
LIMA1-210ENST00000552045 EDARADDQ8WWZ3 215 aa8.77□□□□□ -1.01
LIMA1-210ENST00000552045 SYNGAP1Q96PV0 1343 aa8.77□□□□□ -1.01
LIMA1-210ENST00000552045 FAM86C2PA6NEL3 165 aa8.76□□□□□ -1.01
LIMA1-210ENST00000552045 SUSD5O60279 629 aa8.76□□□□□ -1.01
LIMA1-210ENST00000552045 CD68P34810 354 aaPredicted RBP8.76□□□□□ -1.01
LIMA1-210ENST00000552045 ETF1P62495 437 aaKnown RBP8.76□□□□□ -1.01
LIMA1-210ENST00000552045 ERVK-24P63145 666 aa8.76□□□□□ -1.01
LIMA1-210ENST00000552045 TCEA2Q15560 299 aa8.76□□□□□ -1.01
LIMA1-210ENST00000552045 KIAA1211LQ6NV74 962 aa8.76□□□□□ -1.01
LIMA1-210ENST00000552045 SYNPOQ8N3V7 929 aa8.76□□□□□ -1.01
LIMA1-210ENST00000552045 GALNT6Q8NCL4 622 aa8.76□□□□□ -1.01
LIMA1-210ENST00000552045 KLHL6Q8WZ60 621 aa8.76□□□□□ -1.01
LIMA1-210ENST00000552045 EPN3Q9H201 632 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms