RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PDHXO00330 501 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 VAMP4O75379 141 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 HOXD10P28358 340 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 INPP5BP32019 993 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 HDLBPQ00341 1268 aaKnown RBP13.26□□□□□ -0.29
VPS29-208ENST00000550267 PPATQ06203 517 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 MIGA2Q7L4E1 593 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 FBXO33Q7Z6M2 555 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 ANKRD23Q86SG2 305 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 FAM83AQ86UY5 434 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 SLC17A8Q8NDX2 589 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 ADGRA2Q96PE1 1338 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 FANCIQ9NVI1 1328 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 TMOD2Q9NZR1 351 aa13.26□□□□□ -0.29
VPS29-208ENST00000550267 IL16Q14005 1332 aa13.25□□□□□ -0.29
VPS29-208ENST00000550267 ZBTB7BO15156 539 aaPredicted RBP13.25□□□□□ -0.29
VPS29-208ENST00000550267 FRAT2O75474 233 aaPredicted RBP13.25□□□□□ -0.29
VPS29-208ENST00000550267 DCAF15Q66K64 600 aa13.25□□□□□ -0.29
VPS29-208ENST00000550267 VPS37DQ86XT2 251 aa13.25□□□□□ -0.29
VPS29-208ENST00000550267 HOOK2Q96ED9 719 aa13.25□□□□□ -0.29
VPS29-208ENST00000550267 ZDHHC15Q96MV8 337 aa13.25□□□□□ -0.29
VPS29-208ENST00000550267 ZNF341Q9BYN7 854 aa13.25□□□□□ -0.29
VPS29-208ENST00000550267 RNF208Q9H0X6 261 aa13.25□□□□□ -0.29
VPS29-208ENST00000550267 BIN2Q9UBW5 565 aaPredicted RBP13.25□□□□□ -0.29
VPS29-208ENST00000550267 UBXN2AP68543 259 aa13.24□□□□□ -0.29
VPS29-208ENST00000550267 PRKCZQ05513 592 aa13.24□□□□□ -0.29
VPS29-208ENST00000550267 MOGSQ13724 837 aa13.24□□□□□ -0.29
VPS29-208ENST00000550267 FKBP1CQ5VVH2 108 aa13.24□□□□□ -0.29
VPS29-208ENST00000550267 APOBEC3HQ6NTF7 200 aaKnown RBP13.24□□□□□ -0.29
VPS29-208ENST00000550267 U2AF1L4Q8WU68 220 aaKnown RBP13.24□□□□□ -0.29
VPS29-208ENST00000550267 TBC1D22AQ8WUA7 517 aa13.24□□□□□ -0.29
VPS29-208ENST00000550267 SUCLG2Q96I99 432 aa13.24□□□□□ -0.29
VPS29-208ENST00000550267 C9orf78Q9NZ63 289 aaPredicted RBP13.24□□□□□ -0.29
VPS29-208ENST00000550267 FAM198AQ9UFP1 575 aa13.24□□□□□ -0.29
VPS29-208ENST00000550267 NR2E3Q9Y5X4 410 aa13.24□□□□□ -0.29
VPS29-208ENST00000550267 RPAP1Q9BWH6 1393 aaPredicted RBP13.23□□□□□ -0.29
VPS29-208ENST00000550267 MROH5Q6ZUA9 1318 aa13.23□□□□□ -0.29
VPS29-208ENST00000550267 SMAPO00193 183 aa13.23□□□□□ -0.29
VPS29-208ENST00000550267 SOX1O00570 391 aaPredicted RBP13.23□□□□□ -0.29
VPS29-208ENST00000550267 FARP2O94887 1054 aaPredicted RBP13.23□□□□□ -0.29
VPS29-208ENST00000550267 EXOSC9Q06265 439 aaKnown RBP13.23□□□□□ -0.29
VPS29-208ENST00000550267 KAZALD1Q96I82 304 aa13.23□□□□□ -0.29
VPS29-208ENST00000550267 MRIQ9BWK5 157 aa13.23□□□□□ -0.29
VPS29-208ENST00000550267 UNC93B1Q9H1C4 597 aa13.23□□□□□ -0.29
VPS29-208ENST00000550267 GABRQQ9UN88 632 aa13.23□□□□□ -0.29
VPS29-208ENST00000550267 KCNH4Q9UQ05 1017 aa13.23□□□□□ -0.29
VPS29-208ENST00000550267 BCRP11274 1271 aa13.22□□□□□ -0.29
VPS29-208ENST00000550267 FCGRTP55899 365 aa13.22□□□□□ -0.29
VPS29-208ENST00000550267 LRRC24Q50LG9 513 aa13.22□□□□□ -0.29
VPS29-208ENST00000550267 CCDC184Q52MB2 194 aa13.22□□□□□ -0.29
VPS29-208ENST00000550267 CAVIN4Q5BKX8 364 aa13.22□□□□□ -0.29
VPS29-208ENST00000550267 METTL24Q5JXM2 366 aa13.22□□□□□ -0.29
VPS29-208ENST00000550267 TATDN2Q93075 761 aa13.22□□□□□ -0.29
VPS29-208ENST00000550267 ZNF112Q9UJU3 913 aa13.22□□□□□ -0.29
VPS29-208ENST00000550267 MAST3O60307 1309 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 TRIOBPQ9H2D6 2365 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 GRXCR2A6NFK2 248 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 SGPL1O95470 568 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 CYP2C8P10632 490 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 TCP10Q12799 353 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 TJAP1Q5JTD0 557 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 GPAT2Q6NUI2 795 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 SLC4A10Q6U841 1118 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 HHIPL2Q6UWX4 724 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 FAM151AQ8WW52 585 aa13.21□□□□□ -0.29
VPS29-208ENST00000550267 PARK7Q99497 189 aaKnown RBP13.21□□□□□ -0.29
VPS29-208ENST00000550267 A0A1W2PPC1 479 aa13.2□□□□□ -0.3
VPS29-208ENST00000550267 ALDH1L1O75891 902 aa13.2□□□□□ -0.3
VPS29-208ENST00000550267 PDE8BO95263 885 aa13.2□□□□□ -0.3
VPS29-208ENST00000550267 NBPF7P0C2Y1 421 aaPredicted RBP13.2□□□□□ -0.3
VPS29-208ENST00000550267 VGLL2Q8N8G2 317 aa13.2□□□□□ -0.3
VPS29-208ENST00000550267 SRCIN1Q9C0H9 1055 aa13.2□□□□□ -0.3
VPS29-208ENST00000550267 STAP2Q9UGK3 403 aa13.2□□□□□ -0.3
VPS29-208ENST00000550267 ADCY3O60266 1144 aa13.19□□□□□ -0.3
VPS29-208ENST00000550267 INHAP05111 366 aa13.19□□□□□ -0.3
VPS29-208ENST00000550267 ELNP15502 786 aa13.19□□□□□ -0.3
VPS29-208ENST00000550267 NOL9Q5SY16 702 aaKnown RBP13.19□□□□□ -0.3
VPS29-208ENST00000550267 Q6ZNB5 142 aa13.19□□□□□ -0.3
VPS29-208ENST00000550267 BICC1Q9H694 974 aaKnown RBP13.19□□□□□ -0.3
VPS29-208ENST00000550267 WDR70Q9NW82 654 aa13.19□□□□□ -0.3
VPS29-208ENST00000550267 SUGT1Q9Y2Z0 365 aa13.19□□□□□ -0.3
VPS29-208ENST00000550267 SALL2Q9Y467 1007 aaPredicted RBP13.19□□□□□ -0.3
VPS29-208ENST00000550267 C3orf80F5H4A9 247 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 TFRCP02786 760 aaKnown RBP13.18□□□□□ -0.3
VPS29-208ENST00000550267 FLT3LGP49771 235 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 NFIAQ12857 509 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 LAPTM4AQ15012 233 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 RABL6Q3YEC7 729 aaPredicted RBP13.18□□□□□ -0.3
VPS29-208ENST00000550267 CDC42EP5Q6NZY7 148 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 KLHDC4Q8TBB5 520 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 DEFB118Q96PH6 123 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 PNMA3Q9UL41 463 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 DAGLAQ9Y4D2 1042 aa13.18□□□□□ -0.3
VPS29-208ENST00000550267 RANBP2P49792 3224 aaKnown RBP13.17□□□□□ -0.3
VPS29-208ENST00000550267 CXCL11O14625 94 aa13.17□□□□□ -0.3
VPS29-208ENST00000550267 FGFR2P21802 821 aa13.17□□□□□ -0.3
VPS29-208ENST00000550267 DIXDC1Q155Q3 683 aa13.17□□□□□ -0.3
VPS29-208ENST00000550267 ZFPM1Q8IX07 1006 aa13.17□□□□□ -0.3
VPS29-208ENST00000550267 ANKRD44Q8N8A2 993 aa13.17□□□□□ -0.3
VPS29-208ENST00000550267 CACNA1FO60840 1977 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms