RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 GADL1Q6ZQY3 521 aa17.59■□□□□ 0.41
COL2A1-209ENST00000546974 TMEM106CQ9BVX2 250 aa17.59■□□□□ 0.41
COL2A1-209ENST00000546974 TBC1D2Q9BYX2 928 aa17.59■□□□□ 0.41
COL2A1-209ENST00000546974 DHX36Q9H2U1 1008 aaKnown RBP17.59■□□□□ 0.41
COL2A1-209ENST00000546974 TLR7Q9NYK1 1049 aaKnown RBP17.59■□□□□ 0.41
COL2A1-209ENST00000546974 HERC5Q9UII4 1024 aaKnown RBP17.59■□□□□ 0.41
COL2A1-209ENST00000546974 MGAMO43451 1857 aa17.58■□□□□ 0.41
COL2A1-209ENST00000546974 FAM196BA6NMK8 535 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 CYP2C8P10632 490 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 HOXD10P28358 340 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 CTGFP29279 349 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 HSP90AB4PQ58FF6 505 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 ADGRA1Q86SQ6 560 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 TRIM47Q96LD4 638 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 PIH1D3Q9NQM4 214 aaKnown RBP17.58■□□□□ 0.4
COL2A1-209ENST00000546974 PI4KBQ9UBF8 816 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 EXOC6BQ9Y2D4 811 aa17.58■□□□□ 0.4
COL2A1-209ENST00000546974 SIPA1L1O43166 1804 aa17.57■□□□□ 0.4
COL2A1-209ENST00000546974 TRIM75PA6NK02 468 aa17.57■□□□□ 0.4
COL2A1-209ENST00000546974 CAP2P40123 477 aa17.57■□□□□ 0.4
COL2A1-209ENST00000546974 PRPF38BQ5VTL8 546 aaKnown RBP17.57■□□□□ 0.4
COL2A1-209ENST00000546974 TGFBRAP1Q8WUH2 860 aa17.57■□□□□ 0.4
COL2A1-209ENST00000546974 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.57■□□□□ 0.4
COL2A1-209ENST00000546974 SRRDQ9UH36 339 aa17.57■□□□□ 0.4
COL2A1-209ENST00000546974 FMNL1O95466 1100 aaPredicted RBP17.56■□□□□ 0.4
COL2A1-209ENST00000546974 EN2P19622 333 aaPredicted RBP17.56■□□□□ 0.4
COL2A1-209ENST00000546974 OSBPP22059 807 aa17.56■□□□□ 0.4
COL2A1-209ENST00000546974 CCDC84Q86UT8 332 aaPredicted RBP17.56■□□□□ 0.4
COL2A1-209ENST00000546974 METTL16Q86W50 562 aaKnown RBP17.56■□□□□ 0.4
COL2A1-209ENST00000546974 RPAP2Q8IXW5 612 aaPredicted RBP17.56■□□□□ 0.4
COL2A1-209ENST00000546974 DDX19BQ9UMR2 479 aa17.56■□□□□ 0.4
COL2A1-209ENST00000546974 AGTPBP1Q9UPW5 1226 aa17.56■□□□□ 0.4
COL2A1-209ENST00000546974 FLT1P17948 1338 aa17.55■□□□□ 0.4
COL2A1-209ENST00000546974 CYP7A1P22680 504 aa17.55■□□□□ 0.4
COL2A1-209ENST00000546974 RRP1BQ14684 758 aaKnown RBP17.55■□□□□ 0.4
COL2A1-209ENST00000546974 TMED8Q6PL24 325 aaPredicted RBP17.55■□□□□ 0.4
COL2A1-209ENST00000546974 AACSQ86V21 672 aa17.55■□□□□ 0.4
COL2A1-209ENST00000546974 CERS3Q8IU89 383 aa17.55■□□□□ 0.4
COL2A1-209ENST00000546974 FOXP4Q8IVH2 680 aaPredicted RBP17.55■□□□□ 0.4
COL2A1-209ENST00000546974 MAPKAPK5Q8IW41 473 aa17.55■□□□□ 0.4
COL2A1-209ENST00000546974 PROCA1Q8NCQ7 364 aaPredicted RBP17.55■□□□□ 0.4
COL2A1-209ENST00000546974 ZNF280CQ8ND82 737 aa17.55■□□□□ 0.4
COL2A1-209ENST00000546974 SH3TC2Q8TF17 1288 aa17.55■□□□□ 0.4
COL2A1-209ENST00000546974 USP17L5A8MUK1 530 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 IDH1O75874 414 aaKnown RBP17.54■□□□□ 0.4
COL2A1-209ENST00000546974 ECM2O94769 699 aaPredicted RBP17.54■□□□□ 0.4
COL2A1-209ENST00000546974 FCGRTP55899 365 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 SPP2Q13103 211 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 RHPN1Q8TCX5 695 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 CHMP4BQ9H444 224 aaKnown RBP17.54■□□□□ 0.4
COL2A1-209ENST00000546974 ZBTB40Q9NUA8 1239 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 PNMA3Q9UL41 463 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 COG6Q9Y2V7 657 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 MYH1P12882 1939 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 DOCK3Q8IZD9 2030 aa17.54■□□□□ 0.4
COL2A1-209ENST00000546974 LOC285556D6RIA3 1793 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 MYPNQ86TC9 1320 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 HMMRO75330 724 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 DYNLL1P63167 89 aaKnown RBP17.53■□□□□ 0.4
COL2A1-209ENST00000546974 MAP3K12Q12852 859 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 SLC4A8Q2Y0W8 1093 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 MAGEB6Q8N7X4 407 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 RAET1EQ8TD07 263 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 SMCR8Q8TEV9 937 aaPredicted RBP17.53■□□□□ 0.4
COL2A1-209ENST00000546974 AS3MTQ9HBK9 375 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 IL1RAPL2Q9NP60 686 aa17.53■□□□□ 0.4
COL2A1-209ENST00000546974 ASNSP08243 561 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 PABPC4Q13310 644 aaKnown RBP eCLIP17.52■□□□□ 0.4
COL2A1-209ENST00000546974 SH3D19Q5HYK7 790 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 TREML2Q5T2D2 321 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 CLASRPQ8N2M8 674 aaKnown RBP17.52■□□□□ 0.4
COL2A1-209ENST00000546974 KIF1BPQ96EK5 621 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 WDR18Q9BV38 432 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 TRIM34Q9BYJ4 488 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 ANTXR1Q9H6X2 564 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 DNAJC18Q9H819 358 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 GINM1Q9NU53 330 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 RCAN3Q9UKA8 241 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 PALD1Q9ULE6 856 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 NDUFB9Q9Y6M9 179 aa17.52■□□□□ 0.4
COL2A1-209ENST00000546974 HLA-DOAP06340 250 aa17.51■□□□□ 0.39
COL2A1-209ENST00000546974 GRK4P32298 578 aa17.51■□□□□ 0.39
COL2A1-209ENST00000546974 SIRT2Q8IXJ6 389 aa17.51■□□□□ 0.39
COL2A1-209ENST00000546974 CRACR2BQ8N4Y2 399 aaPredicted RBP17.51■□□□□ 0.39
COL2A1-209ENST00000546974 RAB11FIP3O75154 756 aa17.5■□□□□ 0.39
COL2A1-209ENST00000546974 SLC34A2O95436 690 aa17.5■□□□□ 0.39
COL2A1-209ENST00000546974 MYCP01106 439 aaPredicted RBP17.5■□□□□ 0.39
COL2A1-209ENST00000546974 USP5P45974 858 aa17.5■□□□□ 0.39
COL2A1-209ENST00000546974 HMGCS2P54868 508 aa17.5■□□□□ 0.39
COL2A1-209ENST00000546974 PRKCZQ05513 592 aa17.5■□□□□ 0.39
COL2A1-209ENST00000546974 TTF1Q15361 905 aaPredicted RBP17.5■□□□□ 0.39
COL2A1-209ENST00000546974 MIGA1Q8NAN2 632 aa17.5■□□□□ 0.39
COL2A1-209ENST00000546974 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.5■□□□□ 0.39
COL2A1-209ENST00000546974 SAP30BPQ9UHR5 308 aaKnown RBP17.5■□□□□ 0.39
COL2A1-209ENST00000546974 GCLCP48506 637 aaPredicted RBP17.49■□□□□ 0.39
COL2A1-209ENST00000546974 BACE1P56817 501 aa17.49■□□□□ 0.39
COL2A1-209ENST00000546974 FAM110CQ1W6H9 321 aa17.49■□□□□ 0.39
COL2A1-209ENST00000546974 ANKRD13CQ8N6S4 541 aa17.49■□□□□ 0.39
COL2A1-209ENST00000546974 GABRQQ9UN88 632 aa17.49■□□□□ 0.39
COL2A1-209ENST00000546974 C19orf81C9J6K1 198 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms