RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PI16Q6UXB8 463 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 GIGYF2Q6Y7W6 1299 aaKnown RBP15.73■□□□□ 0.11
VPS33A-208ENST00000543633 NFXL1Q6ZNB6 911 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 NUTM2AQ8IVF1 878 aaPredicted RBP15.73■□□□□ 0.11
VPS33A-208ENST00000543633 BAG1Q99933 345 aaPredicted RBP15.73■□□□□ 0.11
VPS33A-208ENST00000543633 KRT23Q9C075 422 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 CEP131Q9UPN4 1083 aa15.73■□□□□ 0.11
VPS33A-208ENST00000543633 ZNF532Q9HCE3 1301 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 CTSWP56202 376 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 MORC3Q14149 939 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 SPECC1LQ69YQ0 1117 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 LDHAL6AQ6ZMR3 332 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 GPR161Q8N6U8 529 aaKnown RBP15.72■□□□□ 0.11
VPS33A-208ENST00000543633 LRRN4CLQ8ND94 238 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 PHKBQ93100 1093 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 CCDC34Q96HJ3 373 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 CLIC6Q96NY7 704 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 STRBPQ96SI9 672 aaKnown RBP15.72■□□□□ 0.11
VPS33A-208ENST00000543633 BCL11BQ9C0K0 894 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-208ENST00000543633 PIH1D3Q9NQM4 214 aaKnown RBP15.72■□□□□ 0.11
VPS33A-208ENST00000543633 MAN1B1Q9UKM7 699 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 URI1O94763 535 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-208ENST00000543633 ITGA6P23229 1130 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 ERCC5P28715 1186 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-208ENST00000543633 FOXP4Q8IVH2 680 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-208ENST00000543633 TRIM22Q8IYM9 498 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 TTLL11Q8NHH1 800 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 FBXO2Q9UK22 296 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-208ENST00000543633 SLC12A7Q9Y666 1083 aa15.72■□□□□ 0.11
VPS33A-208ENST00000543633 WNK3Q9BYP7 1800 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 PATL2C9JE40 543 aaKnown RBP15.71■□□□□ 0.11
VPS33A-208ENST00000543633 TMEM232C9JQI7 657 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 IGSF3O75054 1194 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 MAP3K9P80192 1104 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 JAKMIP3Q5VZ66 844 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 STK11IPQ8N1F8 1099 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 SPATA20Q8TB22 786 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 SMARCE1Q969G3 411 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 AIDAQ96BJ3 306 aa15.71■□□□□ 0.11
VPS33A-208ENST00000543633 CCDC196A0A1B0GTZ2 297 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 PDE8BO95263 885 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 BMP6P22004 513 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 CASQ1P31415 396 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 ISM2Q6H9L7 571 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 TC2NQ8N9U0 490 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 FAM89AQ96GI7 184 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 NAA15Q9BXJ9 866 aaKnown RBP15.7■□□□□ 0.1
VPS33A-208ENST00000543633 SLC26A6Q9BXS9 759 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 UBXN6Q9BZV1 441 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 CNNM1Q9NRU3 951 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 CALCOCO1Q9P1Z2 691 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 MRFAP1Q9Y605 127 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 MYH6P13533 1939 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 IDH1O75874 414 aaKnown RBP15.7■□□□□ 0.1
VPS33A-208ENST00000543633 DEXIO95424 95 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 APPP05067 770 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 GNAT2P19087 354 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 PLA2G4AP47712 749 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 PLCD1P51178 756 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 PDE4BQ07343 736 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 TUBB2AQ13885 445 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 SART3Q15020 963 aaKnown RBP15.7■□□□□ 0.1
VPS33A-208ENST00000543633 TEX35Q5T0J7 233 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 TMTC2Q8N394 836 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 PANX2Q96RD6 677 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 TUBB2BQ9BVA1 445 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 CARD6Q9BX69 1037 aa15.7■□□□□ 0.1
VPS33A-208ENST00000543633 SRPRBQ9Y5M8 271 aaKnown RBP15.7■□□□□ 0.1
VPS33A-208ENST00000543633 NUP98P52948 1817 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 IFIT3O14879 490 aaKnown RBP15.69■□□□□ 0.1
VPS33A-208ENST00000543633 SEMA3EO15041 775 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 FANCGO15287 622 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 CYP2C19P33261 490 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 PPP2R5BQ15173 497 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 PUM3Q15397 648 aaKnown RBP15.69■□□□□ 0.1
VPS33A-208ENST00000543633 AKNAD1Q5T1N1 836 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 RSRC2Q7L4I2 434 aaKnown RBP15.69■□□□□ 0.1
VPS33A-208ENST00000543633 NLRP10Q86W26 655 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 DIS3L2Q8IYB7 885 aaKnown RBP15.69■□□□□ 0.1
VPS33A-208ENST00000543633 STAG1Q8WVM7 1258 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 LPIN2Q92539 896 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 RABGGTAQ92696 567 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 NAPBQ9H115 298 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 RAI14Q9P0K7 980 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 DENND2AQ9ULE3 1009 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 NFE2L3Q9Y4A8 694 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 SPATA31A1Q5TZJ5 1347 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 MROH5Q6ZUA9 1318 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 PNPLA7Q6ZV29 1317 aa15.69■□□□□ 0.1
VPS33A-208ENST00000543633 STARD3NLO95772 234 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 FGFR2P21802 821 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 TUBB4BP68371 445 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 RTN1Q16799 776 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 IFNL3Q8IZI9 196 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 KIFC2Q96AC6 838 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 AK7Q96M32 723 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 GREM2Q9H772 168 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 SENP2Q9HC62 589 aa15.68■□□□□ 0.1
VPS33A-208ENST00000543633 EPB41L4AQ9HCS5 686 aaPredicted RBP15.68■□□□□ 0.1
VPS33A-208ENST00000543633 TMOD3Q9NYL9 352 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms