RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	SCYL3	Q8IZE3	742 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	KBTBD3	Q8NAB2	608 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	RILPL2	Q969X0	211 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	RIOK1	Q9BRS2	568 aa	Known RBP	13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	PRDM10	Q9NQV6	1147 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	ZNF112	Q9UJU3	913 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	SLC4A4	Q9Y6R1	1079 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	MAST2	Q6P0Q8	1798 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	RFX7	Q2KHR2	1363 aa		13.32	□□□□□ -0.28
DDB1-222	ENST00000543627	TRIM75P	A6NK02	468 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	RNF113A	O15541	343 aa	Known RBP	13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	CTNND1	O60716	968 aa	Known RBP	13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	CAPN15	O75808	1086 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	ECM2	O94769	699 aa	Predicted RBP	13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	GDF11	O95390	407 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	PPAT	Q06203	517 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	SNAPC2	Q13487	334 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	TTC6	Q86TZ1	520 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	STK11IP	Q8N1F8	1099 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	PI4K2B	Q8TCG2	481 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	DDRGK1	Q96HY6	314 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	PUS7L	Q9H0K6	701 aa	Known RBP	13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	SAGE1	Q9NXZ1	904 aa		13.31	□□□□□ -0.28
DDB1-222	ENST00000543627	TBC1D12	O60347	775 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	ALDH1A1	P00352	501 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	APP	P05067	770 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	CETP	P11597	493 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	PTPRA	P18433	802 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	PDE1A	P54750	535 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	PPIL2	Q13356	520 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	UBE3C	Q15386	1083 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	TMED8	Q6PL24	325 aa	Predicted RBP	13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	GADL1	Q6ZQY3	521 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	SMC5	Q8IY18	1101 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	BRI3BP	Q8WY22	251 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	MS4A4A	Q96JQ5	239 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	PTPN18	Q99952	460 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	R3HDML	Q9H3Y0	253 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	HERC5	Q9UII4	1024 aa	Known RBP	13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	OTOF	Q9HC10	1997 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	ATRNL1	Q5VV63	1379 aa		13.3	□□□□□ -0.28
DDB1-222	ENST00000543627	THSD7B	Q9C0I4	1608 aa		13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	CYP2D6	P10635	497 aa		13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	CAP2	P40123	477 aa		13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	PLCD1	P51178	756 aa		13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	NUCB1	Q02818	461 aa		13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	RRP1B	Q14684	758 aa	Known RBP	13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	TAF1C	Q15572	869 aa	Predicted RBP	13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	NOL9	Q5SY16	702 aa	Known RBP	13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	AMOTL1	Q8IY63	956 aa		13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	FAM43A	Q8N2R8	423 aa		13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	DOCK2	Q92608	1830 aa		13.29	□□□□□ -0.28
DDB1-222	ENST00000543627	GPR25	O00155	361 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	MPHOSPH10	O00566	681 aa	Known RBP	13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	ZFY	P08048	801 aa	Predicted RBP	13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	MAP3K10	Q02779	954 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	EVX2	Q03828	476 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	SPP2	Q13103	211 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	CRHR2	Q13324	411 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	APPBP2	Q92624	585 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	OSBP2	Q969R2	916 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	SEC62	Q99442	399 aa	Known RBP	13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	SERPINB13	Q9UIV8	391 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	CASP8AP2	Q9UKL3	1982 aa		13.28	□□□□□ -0.28
DDB1-222	ENST00000543627	CYP2D7	A0A087X1C5	515 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	MINDY4B	A8MYZ0	360 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	BTBD19	C9JJ37	291 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627		M0R2C6	588 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	DGKZ	Q13574	1117 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	RAB3GAP1	Q15042	981 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	CERKL	Q49MI3	558 aa	Predicted RBP	13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	EVI5L	Q96CN4	794 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	DYNLL2	Q96FJ2	89 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	ZFYVE28	Q9HCC9	887 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	ATP8A2	Q9NTI2	1148 aa		13.27	□□□□□ -0.29
DDB1-222	ENST00000543627	TESPA1	A2RU30	521 aa	Predicted RBP	13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	USP17L5	A8MUK1	530 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	USP17L12	C9JPN9	530 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	USP17L21	D6R901	530 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	PDHX	O00330	501 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	GPAA1	O43292	621 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	GH2	P01242	217 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	TDO2	P48775	406 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	CCDC129	Q6ZRS4	1044 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	PLEKHM2	Q8IWE5	1019 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	STRBP	Q96SI9	672 aa	Known RBP	13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	DNAJC18	Q9H819	358 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	AS3MT	Q9HBK9	375 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	CABP5	Q9NP86	173 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	STAP2	Q9UGK3	403 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	AFG3L2	Q9Y4W6	797 aa		13.26	□□□□□ -0.29
DDB1-222	ENST00000543627	MYH1	P12882	1939 aa		13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	COL2A1	P02458	1487 aa	Predicted RBP	13.25	□□□□□ -0.29
DDB1-222	ENST00000543627	SALL3	Q9BXA9	1300 aa		13.25	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms