RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PI4KBQ9UBF8 816 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 SRRDQ9UH36 339 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 DBNLQ9UJU6 430 aaKnown RBP16.04■□□□□ 0.16
RTN3-213ENST00000543552 PNMA3Q9UL41 463 aa16.04■□□□□ 0.16
RTN3-213ENST00000543552 CYP2E1P05181 493 aaPredicted RBP16.03■□□□□ 0.16
RTN3-213ENST00000543552 PPP4CP60510 307 aa16.03■□□□□ 0.16
RTN3-213ENST00000543552 PABPC4Q13310 644 aaKnown RBP eCLIP16.03■□□□□ 0.16
RTN3-213ENST00000543552 PROCA1Q8NCQ7 364 aaPredicted RBP16.03■□□□□ 0.16
RTN3-213ENST00000543552 RAET1EQ8TD07 263 aa16.03■□□□□ 0.16
RTN3-213ENST00000543552 TRIM47Q96LD4 638 aa16.03■□□□□ 0.16
RTN3-213ENST00000543552 CHMP4BQ9H444 224 aaKnown RBP16.03■□□□□ 0.16
RTN3-213ENST00000543552 AGTPBP1Q9UPW5 1226 aa16.03■□□□□ 0.16
RTN3-213ENST00000543552 MYPNQ86TC9 1320 aa16.02■□□□□ 0.16
RTN3-213ENST00000543552 SLC34A2O95436 690 aa16.02■□□□□ 0.16
RTN3-213ENST00000543552 CYP2C8P10632 490 aa16.02■□□□□ 0.16
RTN3-213ENST00000543552 BCRP11274 1271 aa16.02■□□□□ 0.16
RTN3-213ENST00000543552 ZAP70P43403 619 aa16.02■□□□□ 0.16
RTN3-213ENST00000543552 ZNF280CQ8ND82 737 aa16.02■□□□□ 0.16
RTN3-213ENST00000543552 AS3MTQ9HBK9 375 aa16.02■□□□□ 0.16
RTN3-213ENST00000543552 PTPRFP10586 1907 aa16.02■□□□□ 0.15
RTN3-213ENST00000543552 ZSWIM8A7E2V4 1837 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 PHIPQ8WWQ0 1821 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 FAM196BA6NMK8 535 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 HMMRO75330 724 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 OSBPP22059 807 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 CAP2P40123 477 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 CRACR2BQ8N4Y2 399 aaPredicted RBP16.01■□□□□ 0.15
RTN3-213ENST00000543552 PANK1Q8TE04 598 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 SH3TC2Q8TF17 1288 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 EAF2Q96CJ1 260 aaPredicted RBP16.01■□□□□ 0.15
RTN3-213ENST00000543552 CCDC8Q9H0W5 538 aaPredicted RBP16.01■□□□□ 0.15
RTN3-213ENST00000543552 GINM1Q9NU53 330 aa16.01■□□□□ 0.15
RTN3-213ENST00000543552 FLT1P17948 1338 aa16■□□□□ 0.15
RTN3-213ENST00000543552 USP17L5A8MUK1 530 aa16■□□□□ 0.15
RTN3-213ENST00000543552 IDH1O75874 414 aaKnown RBP16■□□□□ 0.15
RTN3-213ENST00000543552 HLA-DOAP06340 250 aa16■□□□□ 0.15
RTN3-213ENST00000543552 ASNSP08243 561 aa16■□□□□ 0.15
RTN3-213ENST00000543552 EN2P19622 333 aaPredicted RBP16■□□□□ 0.15
RTN3-213ENST00000543552 GRK4P32298 578 aa16■□□□□ 0.15
RTN3-213ENST00000543552 MAP3K12Q12852 859 aa16■□□□□ 0.15
RTN3-213ENST00000543552 AACSQ86V21 672 aa16■□□□□ 0.15
RTN3-213ENST00000543552 FOXP4Q8IVH2 680 aaPredicted RBP16■□□□□ 0.15
RTN3-213ENST00000543552 MAPKAPK5Q8IW41 473 aa16■□□□□ 0.15
RTN3-213ENST00000543552 TGFBRAP1Q8WUH2 860 aa16■□□□□ 0.15
RTN3-213ENST00000543552 GCC1Q96CN9 775 aa16■□□□□ 0.15
RTN3-213ENST00000543552 TLR7Q9NYK1 1049 aaKnown RBP16■□□□□ 0.15
RTN3-213ENST00000543552 DDX19BQ9UMR2 479 aa16■□□□□ 0.15
RTN3-213ENST00000543552 EXOC6BQ9Y2D4 811 aa16■□□□□ 0.15
RTN3-213ENST00000543552 ATAD5Q96QE3 1844 aa15.99■□□□□ 0.15
RTN3-213ENST00000543552 ECM2O94769 699 aaPredicted RBP15.99■□□□□ 0.15
RTN3-213ENST00000543552 SLURP2P0DP57 97 aa15.99■□□□□ 0.15
RTN3-213ENST00000543552 CYP7A1P22680 504 aa15.99■□□□□ 0.15
RTN3-213ENST00000543552 SPP2Q13103 211 aa15.99■□□□□ 0.15
RTN3-213ENST00000543552 SLAIN1Q8ND83 568 aa15.99■□□□□ 0.15
RTN3-213ENST00000543552 NKX2-3Q8TAU0 364 aa15.99■□□□□ 0.15
RTN3-213ENST00000543552 PIH1D3Q9NQM4 214 aaKnown RBP15.99■□□□□ 0.15
RTN3-213ENST00000543552 FOCADQ5VW36 1801 aa15.98■□□□□ 0.15
RTN3-213ENST00000543552 LOC285556D6RIA3 1793 aa15.98■□□□□ 0.15
RTN3-213ENST00000543552 TNPO2O14787 897 aaKnown RBP15.98■□□□□ 0.15
RTN3-213ENST00000543552 CTGFP29279 349 aa15.98■□□□□ 0.15
RTN3-213ENST00000543552 GCLCP48506 637 aaPredicted RBP15.98■□□□□ 0.15
RTN3-213ENST00000543552 UBXN2AP68543 259 aa15.98■□□□□ 0.15
RTN3-213ENST00000543552 TTF1Q15361 905 aaPredicted RBP15.98■□□□□ 0.15
RTN3-213ENST00000543552 ADGRA1Q86SQ6 560 aa15.98■□□□□ 0.15
RTN3-213ENST00000543552 RPAP2Q8IXW5 612 aaPredicted RBP15.98■□□□□ 0.15
RTN3-213ENST00000543552 CLASRPQ8N2M8 674 aaKnown RBP15.98■□□□□ 0.15
RTN3-213ENST00000543552 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.98■□□□□ 0.15
RTN3-213ENST00000543552 BIN2Q9UBW5 565 aaPredicted RBP15.98■□□□□ 0.15
RTN3-213ENST00000543552 MYCP01106 439 aaPredicted RBP15.97■□□□□ 0.15
RTN3-213ENST00000543552 USP5P45974 858 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 HMGCS2P54868 508 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 PRKCZQ05513 592 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 FAM110CQ1W6H9 321 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 TREML2Q5T2D2 321 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 CCDC84Q86UT8 332 aaPredicted RBP15.97■□□□□ 0.15
RTN3-213ENST00000543552 METTL16Q86W50 562 aaKnown RBP15.97■□□□□ 0.15
RTN3-213ENST00000543552 MAGEB6Q8N7X4 407 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 KIF1BPQ96EK5 621 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 WDR18Q9BV38 432 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 TMOD4Q9NZQ9 345 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 MGAMO43451 1857 aa15.97■□□□□ 0.15
RTN3-213ENST00000543552 SH3D19Q5HYK7 790 aa15.96■□□□□ 0.15
RTN3-213ENST00000543552 RHPN1Q8TCX5 695 aa15.96■□□□□ 0.15
RTN3-213ENST00000543552 COA7Q96BR5 231 aa15.96■□□□□ 0.15
RTN3-213ENST00000543552 PALD1Q9ULE6 856 aa15.96■□□□□ 0.15
RTN3-213ENST00000543552 CDK5RAP2Q96SN8 1893 aa15.96■□□□□ 0.15
RTN3-213ENST00000543552 IFIT2P09913 472 aaKnown RBP15.95■□□□□ 0.14
RTN3-213ENST00000543552 IRX3P78415 501 aaPredicted RBP15.95■□□□□ 0.14
RTN3-213ENST00000543552 ANKRD13CQ8N6S4 541 aa15.95■□□□□ 0.14
RTN3-213ENST00000543552 MIGA1Q8NAN2 632 aa15.95■□□□□ 0.14
RTN3-213ENST00000543552 SAP30BPQ9UHR5 308 aaKnown RBP15.95■□□□□ 0.14
RTN3-213ENST00000543552 SIPA1L1O43166 1804 aa15.95■□□□□ 0.14
RTN3-213ENST00000543552 MYO5AQ9Y4I1 1855 aaKnown RBP15.95■□□□□ 0.14
RTN3-213ENST00000543552 C19orf81C9J6K1 198 aa15.94■□□□□ 0.14
RTN3-213ENST00000543552 ADCY3O60266 1144 aa15.94■□□□□ 0.14
RTN3-213ENST00000543552 RAB11FIP3O75154 756 aa15.94■□□□□ 0.14
RTN3-213ENST00000543552 CAPN2P17655 700 aa15.94■□□□□ 0.14
RTN3-213ENST00000543552 BACE1P56817 501 aa15.94■□□□□ 0.14
RTN3-213ENST00000543552 DYNLL1P63167 89 aaKnown RBP15.94■□□□□ 0.14
RTN3-213ENST00000543552 IRF5Q13568 498 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms