RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 SWAP70Q9UH65 585 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 SERPINB13Q9UIV8 391 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 PALD1Q9ULE6 856 aa14.53□□□□□ -0.08
DDX55-210ENST00000543016 TMEM88BA6NKF7 163 aa14.52□□□□□ -0.09
DDX55-210ENST00000543016 REC8O95072 547 aa14.52□□□□□ -0.09
DDX55-210ENST00000543016 FGAP02671 866 aa14.52□□□□□ -0.09
DDX55-210ENST00000543016 APLP1P51693 650 aa14.52□□□□□ -0.09
DDX55-210ENST00000543016 CTR9Q6PD62 1173 aa14.52□□□□□ -0.09
DDX55-210ENST00000543016 CRACR2BQ8N4Y2 399 aaPredicted RBP14.52□□□□□ -0.09
DDX55-210ENST00000543016 GINM1Q9NU53 330 aa14.52□□□□□ -0.09
DDX55-210ENST00000543016 SAP30BPQ9UHR5 308 aaKnown RBP14.52□□□□□ -0.09
DDX55-210ENST00000543016 SCAF8Q9UPN6 1271 aaKnown RBP14.52□□□□□ -0.09
DDX55-210ENST00000543016 FOCADQ5VW36 1801 aa14.52□□□□□ -0.09
DDX55-210ENST00000543016 PCP11498 1178 aaKnown RBP14.51□□□□□ -0.09
DDX55-210ENST00000543016 VPS53Q5VIR6 699 aa14.51□□□□□ -0.09
DDX55-210ENST00000543016 PRAMEF18Q5VWM3 479 aa14.51□□□□□ -0.09
DDX55-210ENST00000543016 CST9Q5W186 159 aa14.51□□□□□ -0.09
DDX55-210ENST00000543016 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.51□□□□□ -0.09
DDX55-210ENST00000543016 EPB41L4AQ9HCS5 686 aaPredicted RBP14.51□□□□□ -0.09
DDX55-210ENST00000543016 ZNF112Q9UJU3 913 aa14.51□□□□□ -0.09
DDX55-210ENST00000543016 ANAPC4Q9UJX5 808 aa14.51□□□□□ -0.09
DDX55-210ENST00000543016 FOXP2O15409 715 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 USP2O75604 605 aaPredicted RBP14.5□□□□□ -0.09
DDX55-210ENST00000543016 PLCD1P51178 756 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 C1QTNF8P60827 252 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 MAP3K9P80192 1104 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 GABPAQ06546 454 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 TTLL12Q14166 644 aaPredicted RBP14.5□□□□□ -0.09
DDX55-210ENST00000543016 MAP4K1Q92918 833 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 KLRG1Q96E93 195 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 HHIPL1Q96JK4 782 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 ZNF408Q9H9D4 720 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 CREBZFQ9NS37 354 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 CDK5RAP2Q96SN8 1893 aa14.5□□□□□ -0.09
DDX55-210ENST00000543016 ROBO3Q96MS0 1386 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 MINDY4BA8MYZ0 360 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 CTNND1O60716 968 aaKnown RBP14.49□□□□□ -0.09
DDX55-210ENST00000543016 PDE4BQ07343 736 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 PPARAQ07869 468 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 IMMTQ16891 758 aaKnown RBP14.49□□□□□ -0.09
DDX55-210ENST00000543016 LDLRAD1Q5T700 205 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 TATDN1Q6P1N9 297 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 C16orf86Q6ZW13 317 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 CDAN1Q8IWY9 1227 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 ANKRD13AQ8IZ07 590 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 CCDC17Q96LX7 622 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 IL25Q9H293 177 aa14.49□□□□□ -0.09
DDX55-210ENST00000543016 ANGEL1Q9UNK9 670 aaKnown RBP14.49□□□□□ -0.09
DDX55-210ENST00000543016 TRPM7Q96QT4 1865 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 SSC5DA1L4H1 1573 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 PAPPA2Q9BXP8 1791 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 ZNF213O14771 459 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 NOL9Q5SY16 702 aaKnown RBP14.48□□□□□ -0.09
DDX55-210ENST00000543016 DLK2Q6UY11 383 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 MIGA2Q7L4E1 593 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.48□□□□□ -0.09
DDX55-210ENST00000543016 LSG1Q9H089 658 aaKnown RBP14.48□□□□□ -0.09
DDX55-210ENST00000543016 RNF41Q9H4P4 317 aaPredicted RBP14.48□□□□□ -0.09
DDX55-210ENST00000543016 ANO2Q9NQ90 1003 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 CSADQ9Y600 493 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 TLL2Q9Y6L7 1015 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 MYH1P12882 1939 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 NAV1Q8NEY1 1877 aa14.48□□□□□ -0.09
DDX55-210ENST00000543016 PHF20L1A8MW92 1017 aa14.47□□□□□ -0.09
DDX55-210ENST00000543016 FGRP09769 529 aa14.47□□□□□ -0.09
DDX55-210ENST00000543016 CYP2D6P10635 497 aa14.47□□□□□ -0.09
DDX55-210ENST00000543016 FMR1Q06787 632 aaKnown RBP eCLIP14.47□□□□□ -0.09
DDX55-210ENST00000543016 RNF20Q5VTR2 975 aa14.47□□□□□ -0.09
DDX55-210ENST00000543016 SAPCD2Q86UD0 394 aa14.47□□□□□ -0.09
DDX55-210ENST00000543016 WRNIP1Q96S55 665 aa14.47□□□□□ -0.09
DDX55-210ENST00000543016 TBC1D2Q9BYX2 928 aa14.47□□□□□ -0.09
DDX55-210ENST00000543016 DDX60LQ5H9U9 1706 aaKnown RBP14.46□□□□□ -0.09
DDX55-210ENST00000543016 ASNSP08243 561 aa14.46□□□□□ -0.09
DDX55-210ENST00000543016 HSPA6P17066 643 aa14.46□□□□□ -0.09
DDX55-210ENST00000543016 CAP2P40123 477 aa14.46□□□□□ -0.09
DDX55-210ENST00000543016 CDK8P49336 464 aa14.46□□□□□ -0.09
DDX55-210ENST00000543016 HUNKP57058 714 aa14.46□□□□□ -0.09
DDX55-210ENST00000543016 PTH1RQ03431 593 aa14.46□□□□□ -0.09
DDX55-210ENST00000543016 CERKLQ49MI3 558 aaPredicted RBP14.46□□□□□ -0.09
DDX55-210ENST00000543016 MKNK2Q9HBH9 465 aa14.46□□□□□ -0.09
DDX55-210ENST00000543016 ABT1Q9ULW3 272 aaKnown RBP14.46□□□□□ -0.09
DDX55-210ENST00000543016 CYP2D7A0A087X1C5 515 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 UBE2Q2LH0YL09 131 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 ORC4O43929 436 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 SHMT1P34896 483 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 PRKG1Q13976 671 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 PPP4R3BQ5MIZ7 849 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 AKNAD1Q5T1N1 836 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.45□□□□□ -0.1
DDX55-210ENST00000543016 SCYL3Q8IZE3 742 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 ZNF444Q8N0Y2 327 aaPredicted RBP14.45□□□□□ -0.1
DDX55-210ENST00000543016 STAG1Q8WVM7 1258 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 CCDC102AQ96A19 550 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 SLC10A4Q96EP9 437 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 DNAJC18Q9H819 358 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 CABP5Q9NP86 173 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 PICK1Q9NRD5 415 aa14.45□□□□□ -0.1
DDX55-210ENST00000543016 RBM8AQ9Y5S9 174 aaKnown RBP14.45□□□□□ -0.1
DDX55-210ENST00000543016 RASSF10A6NK89 507 aa14.44□□□□□ -0.1
DDX55-210ENST00000543016 NECTIN1Q15223 517 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms