RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 DDX19BQ9UMR2 479 aa19.12■□□□□ 0.65
VPS33A-206ENST00000542310 PTCH2Q9Y6C5 1203 aa19.12■□□□□ 0.65
VPS33A-206ENST00000542310 DDX60LQ5H9U9 1706 aaKnown RBP19.11■□□□□ 0.65
VPS33A-206ENST00000542310 NBPF11Q86T75 865 aa19.11■□□□□ 0.65
VPS33A-206ENST00000542310 ARHGAP39Q9C0H5 1083 aa19.11■□□□□ 0.65
VPS33A-206ENST00000542310 AATFQ9NY61 560 aaKnown RBP eCLIP19.11■□□□□ 0.65
VPS33A-206ENST00000542310 FLT1P17948 1338 aa19.1■□□□□ 0.65
VPS33A-206ENST00000542310 BCRP11274 1271 aa19.1■□□□□ 0.65
VPS33A-206ENST00000542310 CCDC8Q9H0W5 538 aaPredicted RBP19.1■□□□□ 0.65
VPS33A-206ENST00000542310 CHMP4BQ9H444 224 aaKnown RBP19.1■□□□□ 0.65
VPS33A-206ENST00000542310 PI4KBQ9UBF8 816 aa19.1■□□□□ 0.65
VPS33A-206ENST00000542310 CPA4Q9UI42 421 aa19.1■□□□□ 0.65
VPS33A-206ENST00000542310 EXOC6BQ9Y2D4 811 aa19.1■□□□□ 0.65
VPS33A-206ENST00000542310 MKI67P46013 3256 aaKnown RBP19.1■□□□□ 0.65
VPS33A-206ENST00000542310 HMMRO75330 724 aa19.09■□□□□ 0.65
VPS33A-206ENST00000542310 PRPF38BQ5VTL8 546 aaKnown RBP19.09■□□□□ 0.65
VPS33A-206ENST00000542310 ADGRA1Q86SQ6 560 aa19.09■□□□□ 0.65
VPS33A-206ENST00000542310 RPAP2Q8IXW5 612 aaPredicted RBP19.09■□□□□ 0.65
VPS33A-206ENST00000542310 PIH1D3Q9NQM4 214 aaKnown RBP19.09■□□□□ 0.65
VPS33A-206ENST00000542310 AGTPBP1Q9UPW5 1226 aa19.09■□□□□ 0.65
VPS33A-206ENST00000542310 NAV1Q8NEY1 1877 aa19.09■□□□□ 0.65
VPS33A-206ENST00000542310 POTEFA5A3E0 1075 aa19.08■□□□□ 0.64
VPS33A-206ENST00000542310 FAM196BA6NMK8 535 aa19.08■□□□□ 0.64
VPS33A-206ENST00000542310 SLURP2P0DP57 97 aa19.08■□□□□ 0.64
VPS33A-206ENST00000542310 HOXD10P28358 340 aa19.08■□□□□ 0.64
VPS33A-206ENST00000542310 CAP2P40123 477 aa19.08■□□□□ 0.64
VPS33A-206ENST00000542310 GADL1Q6ZQY3 521 aa19.08■□□□□ 0.64
VPS33A-206ENST00000542310 AACSQ86V21 672 aa19.08■□□□□ 0.64
VPS33A-206ENST00000542310 METTL16Q86W50 562 aaKnown RBP19.08■□□□□ 0.64
VPS33A-206ENST00000542310 PROCA1Q8NCQ7 364 aaPredicted RBP19.08■□□□□ 0.64
VPS33A-206ENST00000542310 TRIM75PA6NK02 468 aa19.07■□□□□ 0.64
VPS33A-206ENST00000542310 PSMC4P43686 418 aa19.07■□□□□ 0.64
VPS33A-206ENST00000542310 TRIM47Q96LD4 638 aa19.07■□□□□ 0.64
VPS33A-206ENST00000542310 TMEM106CQ9BVX2 250 aa19.07■□□□□ 0.64
VPS33A-206ENST00000542310 GINM1Q9NU53 330 aa19.07■□□□□ 0.64
VPS33A-206ENST00000542310 ZBTB40Q9NUA8 1239 aa19.07■□□□□ 0.64
VPS33A-206ENST00000542310 SRRDQ9UH36 339 aa19.07■□□□□ 0.64
VPS33A-206ENST00000542310 PNMA3Q9UL41 463 aa19.07■□□□□ 0.64
VPS33A-206ENST00000542310 IDH1O75874 414 aaKnown RBP19.06■□□□□ 0.64
VPS33A-206ENST00000542310 CYP2C8P10632 490 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 CTGFP29279 349 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 FCGRTP55899 365 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 ZNF280CQ8ND82 737 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 RHPN1Q8TCX5 695 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 TGFBRAP1Q8WUH2 860 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 KIF1BPQ96EK5 621 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 AS3MTQ9HBK9 375 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.06■□□□□ 0.64
VPS33A-206ENST00000542310 RCAN3Q9UKA8 241 aa19.06■□□□□ 0.64
VPS33A-206ENST00000542310 USP17L5A8MUK1 530 aa19.05■□□□□ 0.64
VPS33A-206ENST00000542310 OSBPP22059 807 aa19.05■□□□□ 0.64
VPS33A-206ENST00000542310 CYP7A1P22680 504 aa19.05■□□□□ 0.64
VPS33A-206ENST00000542310 MAP3K12Q12852 859 aa19.05■□□□□ 0.64
VPS33A-206ENST00000542310 MAPKAPK5Q8IW41 473 aa19.05■□□□□ 0.64
VPS33A-206ENST00000542310 CLASRPQ8N2M8 674 aaKnown RBP19.05■□□□□ 0.64
VPS33A-206ENST00000542310 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.05■□□□□ 0.64
VPS33A-206ENST00000542310 COG6Q9Y2V7 657 aa19.05■□□□□ 0.64
VPS33A-206ENST00000542310 MYH7P12883 1935 aa19.05■□□□□ 0.64
VPS33A-206ENST00000542310 MYPNQ86TC9 1320 aa19.04■□□□□ 0.64
VPS33A-206ENST00000542310 FMNL1O95466 1100 aaPredicted RBP19.04■□□□□ 0.64
VPS33A-206ENST00000542310 HLA-DOAP06340 250 aa19.04■□□□□ 0.64
VPS33A-206ENST00000542310 ASNSP08243 561 aa19.04■□□□□ 0.64
VPS33A-206ENST00000542310 PABPC4Q13310 644 aaKnown RBP eCLIP19.04■□□□□ 0.64
VPS33A-206ENST00000542310 TTF1Q15361 905 aaPredicted RBP19.04■□□□□ 0.64
VPS33A-206ENST00000542310 SH3D19Q5HYK7 790 aa19.04■□□□□ 0.64
VPS33A-206ENST00000542310 FOXP4Q8IVH2 680 aaPredicted RBP19.04■□□□□ 0.64
VPS33A-206ENST00000542310 SMCR8Q8TEV9 937 aaPredicted RBP19.04■□□□□ 0.64
VPS33A-206ENST00000542310 DNAJC18Q9H819 358 aa19.04■□□□□ 0.64
VPS33A-206ENST00000542310 RAB11FIP3O75154 756 aa19.03■□□□□ 0.64
VPS33A-206ENST00000542310 SPP2Q13103 211 aa19.03■□□□□ 0.64
VPS33A-206ENST00000542310 RRP1BQ14684 758 aaKnown RBP19.03■□□□□ 0.64
VPS33A-206ENST00000542310 CCDC84Q86UT8 332 aaPredicted RBP19.03■□□□□ 0.64
VPS33A-206ENST00000542310 MAGEB6Q8N7X4 407 aa19.03■□□□□ 0.64
VPS33A-206ENST00000542310 RAET1EQ8TD07 263 aa19.03■□□□□ 0.64
VPS33A-206ENST00000542310 WDR18Q9BV38 432 aa19.03■□□□□ 0.64
VPS33A-206ENST00000542310 TRIM34Q9BYJ4 488 aa19.03■□□□□ 0.64
VPS33A-206ENST00000542310 IL1RAPL2Q9NP60 686 aa19.03■□□□□ 0.64
VPS33A-206ENST00000542310 PDE3AQ14432 1141 aa19.02■□□□□ 0.64
VPS33A-206ENST00000542310 FAM110CQ1W6H9 321 aa19.02■□□□□ 0.64
VPS33A-206ENST00000542310 TREML2Q5T2D2 321 aa19.02■□□□□ 0.64
VPS33A-206ENST00000542310 SIRT2Q8IXJ6 389 aa19.02■□□□□ 0.64
VPS33A-206ENST00000542310 CRACR2BQ8N4Y2 399 aaPredicted RBP19.02■□□□□ 0.64
VPS33A-206ENST00000542310 SH3TC2Q8TF17 1288 aa19.02■□□□□ 0.64
VPS33A-206ENST00000542310 GRK4P32298 578 aa19.01■□□□□ 0.63
VPS33A-206ENST00000542310 DYNLL1P63167 89 aaKnown RBP19.01■□□□□ 0.63
VPS33A-206ENST00000542310 SLC4A8Q2Y0W8 1093 aa19.01■□□□□ 0.63
VPS33A-206ENST00000542310 EHD4Q9H223 541 aa19.01■□□□□ 0.63
VPS33A-206ENST00000542310 ANTXR1Q9H6X2 564 aa19.01■□□□□ 0.63
VPS33A-206ENST00000542310 PALD1Q9ULE6 856 aa19.01■□□□□ 0.63
VPS33A-206ENST00000542310 DOCK3Q8IZD9 2030 aa19.01■□□□□ 0.63
VPS33A-206ENST00000542310 IFIT2P09913 472 aaKnown RBP19■□□□□ 0.63
VPS33A-206ENST00000542310 EN2P19622 333 aaPredicted RBP19■□□□□ 0.63
VPS33A-206ENST00000542310 USP5P45974 858 aa19■□□□□ 0.63
VPS33A-206ENST00000542310 GCLCP48506 637 aaPredicted RBP19■□□□□ 0.63
VPS33A-206ENST00000542310 HMGCS2P54868 508 aa19■□□□□ 0.63
VPS33A-206ENST00000542310 PRKCZQ05513 592 aa19■□□□□ 0.63
VPS33A-206ENST00000542310 MIGA1Q8NAN2 632 aa19■□□□□ 0.63
VPS33A-206ENST00000542310 SLAIN1Q8ND83 568 aa19■□□□□ 0.63
VPS33A-206ENST00000542310 ZBTB21Q9ULJ3 1066 aa19■□□□□ 0.63
VPS33A-206ENST00000542310 NDUFB9Q9Y6M9 179 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms