RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 EPHB4P54760 987 aa10.2□□□□□ -0.78
CHD4-208ENST00000540960 SPDYE2Q495Y8 402 aa10.2□□□□□ -0.78
CHD4-208ENST00000540960 BEND3Q5T5X7 828 aa10.2□□□□□ -0.78
CHD4-208ENST00000540960 ERICH6Q7L0X2 663 aa10.2□□□□□ -0.78
CHD4-208ENST00000540960 JARID2Q92833 1246 aaPredicted RBP10.2□□□□□ -0.78
CHD4-208ENST00000540960 MEIS3Q99687 375 aa10.2□□□□□ -0.78
CHD4-208ENST00000540960 SENP6Q9GZR1 1112 aaPredicted RBP10.2□□□□□ -0.78
CHD4-208ENST00000540960 PLXNA1Q9UIW2 1896 aa10.2□□□□□ -0.78
CHD4-208ENST00000540960 MINPP1Q9UNW1 487 aa10.2□□□□□ -0.78
CHD4-208ENST00000540960 CHD9Q3L8U1 2897 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 F6X3S4 739 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 INPP5BP32019 993 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 PPATQ06203 517 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 LHX8Q68G74 356 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 TRIB2Q92519 343 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 IPO9Q96P70 1041 aaKnown RBP10.19□□□□□ -0.78
CHD4-208ENST00000540960 PARK7Q99497 189 aaKnown RBP10.19□□□□□ -0.78
CHD4-208ENST00000540960 GAS2L1Q99501 681 aaPredicted RBP10.19□□□□□ -0.78
CHD4-208ENST00000540960 USP44Q9H0E7 712 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 CD320Q9NPF0 282 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 CXXC1Q9P0U4 656 aaPredicted RBP10.19□□□□□ -0.78
CHD4-208ENST00000540960 KCNH4Q9UQ05 1017 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 JAG2Q9Y219 1238 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 MAP3K2Q9Y2U5 619 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 CACNA1BQ00975 2339 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 FRMPD3Q5JV73 1810 aa10.19□□□□□ -0.78
CHD4-208ENST00000540960 IGFBP4P22692 258 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 MTX1Q13505 466 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 SH3RF1Q7Z6J0 888 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 ANKRD18AQ8IVF6 992 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 PLBD2Q8NHP8 589 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 ANKS1AQ92625 1134 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 METTL22Q9BUU2 404 aaPredicted RBP10.18□□□□□ -0.78
CHD4-208ENST00000540960 LRRCC1Q9C099 1032 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 LNPKQ9C0E8 428 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 PHAXQ9H814 394 aaKnown RBP10.18□□□□□ -0.78
CHD4-208ENST00000540960 GJD2Q9UKL4 321 aa10.18□□□□□ -0.78
CHD4-208ENST00000540960 UTYO14607 1347 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 PI4K2BG5E9Z4 385 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 GRM8O00222 908 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 RTP1P59025 263 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 FOXK2Q01167 660 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 BECN1Q14457 450 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 C8orf34Q49A92 452 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 MAP3K21Q5TCX8 1036 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 SIRT2Q8IXJ6 389 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 SSH3Q8TE77 659 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 COA7Q96BR5 231 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 TIFAQ96CG3 184 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 GPATCH3Q96I76 525 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 RNPC3Q96LT9 517 aaKnown RBP10.17□□□□□ -0.78
CHD4-208ENST00000540960 C1orf115Q9H7X2 142 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 CD209Q9NNX6 404 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 PRKAG2Q9UGJ0 569 aa10.17□□□□□ -0.78
CHD4-208ENST00000540960 LRRC37A2A6NM11 1700 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 RLFQ13129 1914 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 SNAP23O00161 211 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 PRKAR2AP13861 404 aaKnown RBP10.16□□□□□ -0.78
CHD4-208ENST00000540960 HSP90B1P14625 803 aaKnown RBP10.16□□□□□ -0.78
CHD4-208ENST00000540960 ITGB8P26012 769 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 CCND3P30281 292 aaPredicted RBP10.16□□□□□ -0.78
CHD4-208ENST00000540960 PBX2P40425 430 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 CACNB3P54284 484 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 TNFAIP1Q13829 316 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 MIGA2Q7L4E1 593 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 ANKRD13CQ8N6S4 541 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 KIF1BPQ96EK5 621 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 UIMC1Q96RL1 719 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 OSBPL3Q9H4L5 887 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 PRDM5Q9NQX1 630 aaPredicted RBP10.16□□□□□ -0.78
CHD4-208ENST00000540960 BAHCC1Q9P281 2608 aa10.16□□□□□ -0.78
CHD4-208ENST00000540960 TRIM43BA6NCK2 446 aa10.15□□□□□ -0.78
CHD4-208ENST00000540960 PRR33A8MZF0 331 aa10.15□□□□□ -0.78
CHD4-208ENST00000540960 CCDC152Q4G0S7 254 aa10.15□□□□□ -0.78
CHD4-208ENST00000540960 TRIM43Q96BQ3 446 aaPredicted RBP10.15□□□□□ -0.78
CHD4-208ENST00000540960 ATP11BQ9Y2G3 1177 aa10.15□□□□□ -0.78
CHD4-208ENST00000540960 NOP58Q9Y2X3 529 aaKnown RBP10.15□□□□□ -0.78
CHD4-208ENST00000540960 LRRFIP2Q9Y608 721 aaKnown RBP10.15□□□□□ -0.78
CHD4-208ENST00000540960 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.14□□□□□ -0.79
CHD4-208ENST00000540960 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.14□□□□□ -0.79
CHD4-208ENST00000540960 GRXCR1A8MXD5 290 aa10.14□□□□□ -0.79
CHD4-208ENST00000540960 SRGAP3O43295 1099 aa10.14□□□□□ -0.79
CHD4-208ENST00000540960 TLL1O43897 1013 aa10.14□□□□□ -0.79
CHD4-208ENST00000540960 ST18O60284 1047 aa10.14□□□□□ -0.79
CHD4-208ENST00000540960 CDC45O75419 566 aa10.14□□□□□ -0.79
CHD4-208ENST00000540960 CACNB2Q08289 660 aaPredicted RBP10.14□□□□□ -0.79
CHD4-208ENST00000540960 POLA2Q14181 598 aa10.14□□□□□ -0.79
CHD4-208ENST00000540960 ERC2O15083 957 aa10.13□□□□□ -0.79
CHD4-208ENST00000540960 EPB41L2O43491 1005 aaKnown RBP10.13□□□□□ -0.79
CHD4-208ENST00000540960 SURF6O75683 361 aaKnown RBP10.13□□□□□ -0.79
CHD4-208ENST00000540960 CYP2B6P20813 491 aa10.13□□□□□ -0.79
CHD4-208ENST00000540960 TRIM28Q13263 835 aaKnown RBP10.13□□□□□ -0.79
CHD4-208ENST00000540960 OS9Q13438 667 aaPredicted RBP10.13□□□□□ -0.79
CHD4-208ENST00000540960 GCKRQ14397 625 aa10.13□□□□□ -0.79
CHD4-208ENST00000540960 MICALL1Q8N3F8 863 aa10.13□□□□□ -0.79
CHD4-208ENST00000540960 CCDC191Q8NCU4 936 aa10.13□□□□□ -0.79
CHD4-208ENST00000540960 BSDC1Q9NW68 430 aaPredicted RBP10.13□□□□□ -0.79
CHD4-208ENST00000540960 DAGLAQ9Y4D2 1042 aa10.13□□□□□ -0.79
CHD4-208ENST00000540960 PTPRFP10586 1907 aa10.13□□□□□ -0.79
CHD4-208ENST00000540960 ZNF318Q5VUA4 2279 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms