RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 KLHL10Q6JEL2 608 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 MYRIPQ8NFW9 859 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 CDC5LQ99459 802 aaKnown RBP19.51■□□□□ 0.71
USP28-208ENST00000540438 BCL2L12Q9HB09 334 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 PCDHA5Q9Y5H7 936 aa19.51■□□□□ 0.71
USP28-208ENST00000540438 ABCC6O95255 1503 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 TMEM232C9JQI7 657 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 YEATS4O95619 227 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 CAVIN4Q5BKX8 364 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 NBPF11Q86T75 865 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 DYNLL2Q96FJ2 89 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 SPTLC3Q9NUV7 552 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 LRP6O75581 1613 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 CTAGE5O15320 804 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 RRP9O43818 475 aaKnown RBP19.5■□□□□ 0.71
USP28-208ENST00000540438 SMYD4Q8IYR2 804 aaPredicted RBP19.5■□□□□ 0.71
USP28-208ENST00000540438 ENAHQ8N8S7 591 aaPredicted RBP19.5■□□□□ 0.71
USP28-208ENST00000540438 MAP3K14Q99558 947 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 KCNH3Q9ULD8 1083 aa19.5■□□□□ 0.71
USP28-208ENST00000540438 CDKL5O76039 1030 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 STX17P56962 302 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 SART3Q15020 963 aaKnown RBP19.49■□□□□ 0.71
USP28-208ENST00000540438 ZNF174Q15697 407 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 METTL16Q86W50 562 aaKnown RBP19.49■□□□□ 0.71
USP28-208ENST00000540438 TRIM22Q8IYM9 498 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 SERTAD1Q9UHV2 236 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 USP17L8P0C7I0 530 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 MECOMQ03112 1051 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 PARP10Q53GL7 1025 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 NOSTRINQ8IVI9 506 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 EPSTI1Q96J88 318 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 CMA1P23946 247 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 SLC44A5Q8NCS7 719 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 SETDB2Q96T68 719 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 ANKIB1Q9P2G1 1089 aa19.49■□□□□ 0.71
USP28-208ENST00000540438 COL1A1P02452 1464 aaPredicted RBP19.48■□□□□ 0.71
USP28-208ENST00000540438 SPEF2Q9C093 1822 aa19.48■□□□□ 0.71
USP28-208ENST00000540438 ZNF512BQ96KM6 892 aaPredicted RBP19.48■□□□□ 0.71
USP28-208ENST00000540438 KRT23Q9C075 422 aa19.48■□□□□ 0.71
USP28-208ENST00000540438 FANCLQ9NW38 375 aa19.48■□□□□ 0.71
USP28-208ENST00000540438 SAP30BPQ9UHR5 308 aaKnown RBP19.48■□□□□ 0.71
USP28-208ENST00000540438 SERPINC1P01008 464 aa19.48■□□□□ 0.71
USP28-208ENST00000540438 BMP6P22004 513 aa19.48■□□□□ 0.71
USP28-208ENST00000540438 CRACR2BQ8N4Y2 399 aaPredicted RBP19.48■□□□□ 0.71
USP28-208ENST00000540438 RASGRP4Q8TDF6 673 aa19.48■□□□□ 0.71
USP28-208ENST00000540438 SPATA31A5Q5VU36 1347 aa19.48■□□□□ 0.71
USP28-208ENST00000540438 SPATA31A7Q8IWB4 1347 aa19.48■□□□□ 0.71
USP28-208ENST00000540438 RPS8P62241 208 aaKnown RBP19.47■□□□□ 0.71
USP28-208ENST00000540438 NFIXQ14938 502 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 SAFBQ15424 915 aaKnown RBP eCLIP19.47■□□□□ 0.71
USP28-208ENST00000540438 IFIT1BQ5T764 474 aaKnown RBP19.47■□□□□ 0.71
USP28-208ENST00000540438 DHX58Q96C10 678 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 A0A1W2PQ27 194 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 A0A1W2PQ64 194 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 A0A1W2PQD8 194 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 ZPR1O75312 459 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 AKAP17AQ02040 695 aaKnown RBP19.47■□□□□ 0.71
USP28-208ENST00000540438 CFAP100Q494V2 611 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 ZNF652Q9Y2D9 606 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 DOT1LQ8TEK3 1739 aa19.47■□□□□ 0.71
USP28-208ENST00000540438 FMNL1O95466 1100 aaPredicted RBP19.46■□□□□ 0.71
USP28-208ENST00000540438 SGMS1Q86VZ5 419 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 PLIN2Q99541 437 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 RIOK1Q9BRS2 568 aaKnown RBP19.46■□□□□ 0.71
USP28-208ENST00000540438 MMP1P03956 469 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 CTR9Q6PD62 1173 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 NAT10Q9H0A0 1025 aaKnown RBP19.46■□□□□ 0.71
USP28-208ENST00000540438 ROBO1Q9Y6N7 1651 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 PRKCSHP14314 528 aaPredicted RBP19.46■□□□□ 0.71
USP28-208ENST00000540438 CBX1P83916 185 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 FBXL16Q8N461 479 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 STAG1Q8WVM7 1258 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 GPKOWQ92917 476 aaPredicted RBP eCLIP19.46■□□□□ 0.71
USP28-208ENST00000540438 CSRNP2Q9H175 543 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 MCM9Q9NXL9 1143 aa19.46■□□□□ 0.71
USP28-208ENST00000540438 IGSF3O75054 1194 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 NCAPHQ15003 741 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 EEF2KMTQ96G04 330 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 NLRP3Q96P20 1036 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 GNL3LQ9NVN8 582 aaKnown RBP19.45■□□□□ 0.7
USP28-208ENST00000540438 DYNC1I1O14576 645 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 IFNAR1P17181 557 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 LIFRP42702 1097 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 ARMCX5Q6P1M9 558 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 ESR2Q92731 530 aa19.45■□□□□ 0.7
USP28-208ENST00000540438 CCNL1Q9UK58 526 aaPredicted RBP19.45■□□□□ 0.7
USP28-208ENST00000540438 BAZ2AQ9UIF9 1905 aaKnown RBP19.45■□□□□ 0.7
USP28-208ENST00000540438 NLRP12P59046 1061 aa19.44■□□□□ 0.7
USP28-208ENST00000540438 FANCCQ00597 558 aa19.44■□□□□ 0.7
USP28-208ENST00000540438 CNNM2Q9H8M5 875 aa19.44■□□□□ 0.7
USP28-208ENST00000540438 MAPK8IP1Q9UQF2 711 aa19.44■□□□□ 0.7
USP28-208ENST00000540438 GOLGA8HP0CJ92 632 aa19.44■□□□□ 0.7
USP28-208ENST00000540438 ARHGEF1Q92888 912 aaKnown RBP19.44■□□□□ 0.7
USP28-208ENST00000540438 UIMC1Q96RL1 719 aa19.44■□□□□ 0.7
USP28-208ENST00000540438 ZSCAN10Q96SZ4 725 aaPredicted RBP19.44■□□□□ 0.7
USP28-208ENST00000540438 MYH3P11055 1940 aa19.44■□□□□ 0.7
USP28-208ENST00000540438 MYH7P12883 1935 aa19.44■□□□□ 0.7
USP28-208ENST00000540438 A0A087X0B3 334 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 CCZ1BP86790 482 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 CCZ1P86791 482 aaPredicted RBP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms