RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 PLEKHM2Q8IWE5 1019 aa15.68■□□□□ 0.1
VPS28-216ENST00000533806 OTUD5Q96G74 571 aa15.68■□□□□ 0.1
VPS28-216ENST00000533806 CRNKL1Q9BZJ0 848 aaKnown RBP15.68■□□□□ 0.1
VPS28-216ENST00000533806 ARMT1Q9H993 441 aa15.68■□□□□ 0.1
VPS28-216ENST00000533806 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.68■□□□□ 0.1
VPS28-216ENST00000533806 PRDM10Q9NQV6 1147 aa15.68■□□□□ 0.1
VPS28-216ENST00000533806 ZBTB47Q9UFB7 747 aaPredicted RBP15.68■□□□□ 0.1
VPS28-216ENST00000533806 LAMB1P07942 1786 aa15.67■□□□□ 0.1
VPS28-216ENST00000533806 FOCADQ5VW36 1801 aa15.67■□□□□ 0.1
VPS28-216ENST00000533806 IGF2BP3O00425 579 aaKnown RBP eCLIP15.67■□□□□ 0.1
VPS28-216ENST00000533806 RNF113AO15541 343 aaKnown RBP15.67■□□□□ 0.1
VPS28-216ENST00000533806 TRPA1O75762 1119 aa15.67■□□□□ 0.1
VPS28-216ENST00000533806 ZFYP08048 801 aaPredicted RBP15.67■□□□□ 0.1
VPS28-216ENST00000533806 PPIL2Q13356 520 aa15.67■□□□□ 0.1
VPS28-216ENST00000533806 IFNL1Q8IU54 200 aa15.67■□□□□ 0.1
VPS28-216ENST00000533806 SCYL3Q8IZE3 742 aa15.67■□□□□ 0.1
VPS28-216ENST00000533806 OSBP2Q969R2 916 aa15.67■□□□□ 0.1
VPS28-216ENST00000533806 DCP1AQ9NPI6 582 aaPredicted RBP15.67■□□□□ 0.1
VPS28-216ENST00000533806 SAP30BPQ9UHR5 308 aaKnown RBP15.67■□□□□ 0.1
VPS28-216ENST00000533806 KCNH4Q9UQ05 1017 aa15.67■□□□□ 0.1
VPS28-216ENST00000533806 PRKAB2O43741 272 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 MBD4O95243 580 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 PTPRAP18433 802 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 USP5P45974 858 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 GTF2A2P52657 109 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 COL13A1Q5TAT6 717 aaPredicted RBP15.66■□□□□ 0.1
VPS28-216ENST00000533806 SDR42E1Q8WUS8 393 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 BRI3BPQ8WY22 251 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 APPBP2Q92624 585 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 STRBPQ96SI9 672 aaKnown RBP15.66■□□□□ 0.1
VPS28-216ENST00000533806 EHD4Q9H223 541 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.66■□□□□ 0.1
VPS28-216ENST00000533806 TSKSQ9UJT2 592 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 SIPA1L1O43166 1804 aa15.66■□□□□ 0.1
VPS28-216ENST00000533806 CDK5RAP2Q96SN8 1893 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 CAP2P40123 477 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 PLCD1P51178 756 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 JAG1P78504 1218 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 MOGSQ13724 837 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 TATDN1Q6P1N9 297 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 TICAM2Q86XR7 235 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 ATP8A2Q9NTI2 1148 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 AFG3L2Q9Y4W6 797 aa15.65■□□□□ 0.1
VPS28-216ENST00000533806 CXCL11O14625 94 aa15.64■□□□□ 0.09
VPS28-216ENST00000533806 PDE4AP27815 886 aa15.64■□□□□ 0.09
VPS28-216ENST00000533806 EVX2Q03828 476 aa15.64■□□□□ 0.09
VPS28-216ENST00000533806 GABPAQ06546 454 aa15.64■□□□□ 0.09
VPS28-216ENST00000533806 TTC6Q86TZ1 520 aa15.64■□□□□ 0.09
VPS28-216ENST00000533806 EVI5LQ96CN4 794 aa15.64■□□□□ 0.09
VPS28-216ENST00000533806 R3HDMLQ9H3Y0 253 aa15.64■□□□□ 0.09
VPS28-216ENST00000533806 DDX60LQ5H9U9 1706 aaKnown RBP15.63■□□□□ 0.09
VPS28-216ENST00000533806 ALDH1A1P00352 501 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 HLA-DOAP06340 250 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 CETPP11597 493 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 SNAPC2Q13487 334 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 NOM1Q5C9Z4 860 aaKnown RBP15.63■□□□□ 0.09
VPS28-216ENST00000533806 ZMYM1Q5SVZ6 1142 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 PICK1Q9NRD5 415 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 MCM9Q9NXL9 1143 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.63■□□□□ 0.09
VPS28-216ENST00000533806 SERPINB13Q9UIV8 391 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 ZHX2Q9Y6X8 837 aa15.63■□□□□ 0.09
VPS28-216ENST00000533806 CCL15-CCL14A0A0B4J2E2 113 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 GSG1L2A8MUP6 293 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 M0R2C6 588 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 TBC1D8O95759 1140 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 CCL15Q16663 113 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 SHROOM1Q2M3G4 852 aaPredicted RBP15.62■□□□□ 0.09
VPS28-216ENST00000533806 SLC4A8Q2Y0W8 1093 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 LRRFIP1Q32MZ4 808 aaKnown RBP15.62■□□□□ 0.09
VPS28-216ENST00000533806 FAM43AQ8N2R8 423 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 SEC62Q99442 399 aaKnown RBP15.62■□□□□ 0.09
VPS28-216ENST00000533806 FSD1Q9BTV5 496 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 TAOK2Q9UL54 1235 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 AK9Q5TCS8 1911 aa15.62■□□□□ 0.09
VPS28-216ENST00000533806 BTBD19C9JJ37 291 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 SMIM22K7EJ46 135 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 GPAA1O43292 621 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 CYP2D6P10635 497 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 SHMT1P34896 483 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 C12orf60Q5U649 245 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 GIMAP6Q6P9H5 292 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 CCDC84Q86UT8 332 aaPredicted RBP15.61■□□□□ 0.09
VPS28-216ENST00000533806 CRACR2BQ8N4Y2 399 aaPredicted RBP15.61■□□□□ 0.09
VPS28-216ENST00000533806 ZCCHC17Q9NP64 241 aaKnown RBP15.61■□□□□ 0.09
VPS28-216ENST00000533806 GINM1Q9NU53 330 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 SLC4A4Q9Y6R1 1079 aa15.61■□□□□ 0.09
VPS28-216ENST00000533806 A0A0G2JLL6 359 aaPredicted RBP15.6■□□□□ 0.09
VPS28-216ENST00000533806 USP17L12C9JPN9 530 aa15.6■□□□□ 0.09
VPS28-216ENST00000533806 USP17L21D6R901 530 aa15.6■□□□□ 0.09
VPS28-216ENST00000533806 FOXP2O15409 715 aa15.6■□□□□ 0.09
VPS28-216ENST00000533806 POLR3DP05423 398 aaPredicted RBP15.6■□□□□ 0.09
VPS28-216ENST00000533806 OTUD7BQ6GQQ9 843 aa15.6■□□□□ 0.09
VPS28-216ENST00000533806 GPAT2Q6NUI2 795 aa15.6■□□□□ 0.09
VPS28-216ENST00000533806 CTR9Q6PD62 1173 aa15.6■□□□□ 0.09
VPS28-216ENST00000533806 PRRT2Q7Z6L0 340 aaPredicted RBP15.6■□□□□ 0.09
VPS28-216ENST00000533806 WDR18Q9BV38 432 aa15.6■□□□□ 0.09
VPS28-216ENST00000533806 EPB41L4AQ9HCS5 686 aaPredicted RBP15.6■□□□□ 0.09
VPS28-216ENST00000533806 MYH7P12883 1935 aa15.59■□□□□ 0.09
VPS28-216ENST00000533806 USP17L5A8MUK1 530 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms