RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 NBPF3Q9H094 633 aa16.82■□□□□ 0.28
TRIM3-212ENST00000533064 ROBO3Q96MS0 1386 aa16.82■□□□□ 0.28
TRIM3-212ENST00000533064 ATAD5Q96QE3 1844 aa16.82■□□□□ 0.28
TRIM3-212ENST00000533064 ST18O60284 1047 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 PLCD1P51178 756 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 NEK4P51957 841 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 RRP12Q5JTH9 1297 aaKnown RBP16.81■□□□□ 0.28
TRIM3-212ENST00000533064 STOX1Q6ZVD7 989 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 PI4KBQ9UBF8 816 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 MYH4Q9Y623 1939 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 ATRNL1Q5VV63 1379 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 ANGEL2Q5VTE6 544 aaKnown RBP16.81■□□□□ 0.28
TRIM3-212ENST00000533064 RUFY3Q7L099 469 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 ZFPM1Q8IX07 1006 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 CRACR2BQ8N4Y2 399 aaPredicted RBP16.81■□□□□ 0.28
TRIM3-212ENST00000533064 SNX21Q969T3 373 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 CSRNP1Q96S65 589 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 TBC1D2Q9BYX2 928 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 UPF3BQ9BZI7 483 aaKnown RBP16.81■□□□□ 0.28
TRIM3-212ENST00000533064 MKNK2Q9HBH9 465 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 ZSWIM6Q9HCJ5 1215 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 GGA3Q9NZ52 723 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 SERPINB13Q9UIV8 391 aa16.81■□□□□ 0.28
TRIM3-212ENST00000533064 PITPNM2Q9BZ72 1349 aa16.8■□□□□ 0.28
TRIM3-212ENST00000533064 SLC4A3P48751 1232 aa16.8■□□□□ 0.28
TRIM3-212ENST00000533064 NT5C2P49902 561 aa16.8■□□□□ 0.28
TRIM3-212ENST00000533064 HIRAP54198 1017 aaPredicted RBP16.8■□□□□ 0.28
TRIM3-212ENST00000533064 PNMA8AQ86V59 439 aaPredicted RBP16.8■□□□□ 0.28
TRIM3-212ENST00000533064 TAOK2Q9UL54 1235 aa16.8■□□□□ 0.28
TRIM3-212ENST00000533064 CNTNAP1P78357 1384 aa16.8■□□□□ 0.28
TRIM3-212ENST00000533064 NEDD4P46934 1319 aa16.8■□□□□ 0.28
TRIM3-212ENST00000533064 DDTLA6NHG4 134 aaPredicted RBP16.79■□□□□ 0.28
TRIM3-212ENST00000533064 B4E1Z4 1266 aa16.79■□□□□ 0.28
TRIM3-212ENST00000533064 MCM5P33992 734 aa16.79■□□□□ 0.28
TRIM3-212ENST00000533064 RASA3Q14644 834 aa16.79■□□□□ 0.28
TRIM3-212ENST00000533064 C16orf86Q6ZW13 317 aa16.79■□□□□ 0.28
TRIM3-212ENST00000533064 ESR2Q92731 530 aa16.79■□□□□ 0.28
TRIM3-212ENST00000533064 DCPSQ96C86 337 aaKnown RBP16.79■□□□□ 0.28
TRIM3-212ENST00000533064 DYNLL2Q96FJ2 89 aa16.79■□□□□ 0.28
TRIM3-212ENST00000533064 EHD4Q9H223 541 aa16.79■□□□□ 0.28
TRIM3-212ENST00000533064 TAF1DQ9H5J8 278 aaPredicted RBP16.79■□□□□ 0.28
TRIM3-212ENST00000533064 SWAP70Q9UH65 585 aa16.79■□□□□ 0.28
TRIM3-212ENST00000533064 ASTN2O75129 1339 aaPredicted RBP16.79■□□□□ 0.28
TRIM3-212ENST00000533064 ORC4O43929 436 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 RANBP6O60518 1105 aaKnown RBP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 RPS6KB1P23443 525 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 FGD1P98174 961 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 EAPPQ56P03 285 aaPredicted RBP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 DHX32Q7L7V1 743 aaKnown RBP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 FOXP4Q8IVH2 680 aaPredicted RBP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 TMEM39BQ9GZU3 492 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 SMIM22K7EJ46 135 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 PRDM1O75626 825 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 FGRP09769 529 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 VEGFAP15692 232 aaPredicted RBP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 CDK8P49336 464 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 EVX2Q03828 476 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 SH3BP5LQ7L8J4 393 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 HSCBQ8IWL3 235 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 MB21D2Q8IYB1 491 aaPredicted RBP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 ZNF444Q8N0Y2 327 aaPredicted RBP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 ZC3H15Q8WU90 426 aaKnown RBP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 DEFB129Q9H1M3 183 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 INCENPQ9NQS7 918 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 PDRG1Q9NUG6 133 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.78■□□□□ 0.28
TRIM3-212ENST00000533064 PPP2R3BQ9Y5P8 575 aa16.78■□□□□ 0.28
TRIM3-212ENST00000533064 KDM4AO75164 1064 aa16.77■□□□□ 0.28
TRIM3-212ENST00000533064 CPA1P15085 419 aa16.77■□□□□ 0.28
TRIM3-212ENST00000533064 SART3Q15020 963 aaKnown RBP16.77■□□□□ 0.28
TRIM3-212ENST00000533064 HOOK2Q96ED9 719 aa16.77■□□□□ 0.28
TRIM3-212ENST00000533064 HERC5Q9UII4 1024 aaKnown RBP16.77■□□□□ 0.28
TRIM3-212ENST00000533064 WDR19Q8NEZ3 1342 aa16.77■□□□□ 0.27
TRIM3-212ENST00000533064 TSPY2A6NKD2 308 aa16.76■□□□□ 0.27
TRIM3-212ENST00000533064 GABPAQ06546 454 aa16.76■□□□□ 0.27
TRIM3-212ENST00000533064 IQCA1Q86XH1 822 aa16.76■□□□□ 0.27
TRIM3-212ENST00000533064 SULF1Q8IWU6 871 aa16.76■□□□□ 0.27
TRIM3-212ENST00000533064 RRAGCQ9HB90 399 aa16.76■□□□□ 0.27
TRIM3-212ENST00000533064 SCAF8Q9UPN6 1271 aaKnown RBP16.76■□□□□ 0.27
TRIM3-212ENST00000533064 TACC3Q9Y6A5 838 aa16.76■□□□□ 0.27
TRIM3-212ENST00000533064 GREB1LQ9C091 1923 aaPredicted RBP16.76■□□□□ 0.27
TRIM3-212ENST00000533064 ERICH2A1L162 156 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 POTECB2RU33 542 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 PRC1O43663 620 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 TSPY3P0CV98 308 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 TSPY8P0CW00 308 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 MCM2P49736 904 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 ANKRD1Q15327 319 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 SLC44A5Q8NCS7 719 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 UBAC1Q9BSL1 405 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.75■□□□□ 0.27
TRIM3-212ENST00000533064 ZSWIM5Q9P217 1185 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 CHST3Q7LGC8 479 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 TCEANC2Q96MN5 208 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 CLEC11AQ9Y240 323 aa16.75■□□□□ 0.27
TRIM3-212ENST00000533064 RASA1P20936 1047 aa16.74■□□□□ 0.27
TRIM3-212ENST00000533064 EXOSC10Q01780 885 aaKnown RBP16.74■□□□□ 0.27
TRIM3-212ENST00000533064 Q6ZUG5 572 aa16.74■□□□□ 0.27
TRIM3-212ENST00000533064 CYB5R4Q7L1T6 521 aa16.74■□□□□ 0.27
TRIM3-212ENST00000533064 METTL16Q86W50 562 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms