RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PAXIP1Q6ZW49 1069 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-206ENST00000531480 MIGA2Q7L4E1 593 aa17.35■□□□□ 0.37
CPSF1-206ENST00000531480 ZNF589Q86UQ0 364 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-206ENST00000531480 ANKRD13AQ8IZ07 590 aa17.35■□□□□ 0.37
CPSF1-206ENST00000531480 RAD50Q92878 1312 aa17.35■□□□□ 0.37
CPSF1-206ENST00000531480 DOCK1Q14185 1865 aa17.35■□□□□ 0.37
CPSF1-206ENST00000531480 ZMYM6O95789 1325 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 HLA-DOAP06340 250 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 VEGFBP49765 207 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 PLCD1P51178 756 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 GRM1Q13255 1194 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 ALX1Q15699 326 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 NOL9Q5SY16 702 aaKnown RBP17.34■□□□□ 0.37
CPSF1-206ENST00000531480 RGMBQ6NW40 437 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 CTR9Q6PD62 1173 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 CCDC171Q6TFL3 1326 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 CCDC129Q6ZRS4 1044 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 TTC6Q86TZ1 520 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 ATAD5Q96QE3 1844 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 DIAPH3Q9NSV4 1193 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 MCM9Q9NXL9 1143 aa17.34■□□□□ 0.37
CPSF1-206ENST00000531480 SAP30BPQ9UHR5 308 aaKnown RBP17.34■□□□□ 0.37
CPSF1-206ENST00000531480 PHIPQ8WWQ0 1821 aa17.33■□□□□ 0.37
CPSF1-206ENST00000531480 ROBO3Q96MS0 1386 aa17.33■□□□□ 0.36
CPSF1-206ENST00000531480 FAM155AB1AL88 458 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-206ENST00000531480 SLURP2P0DP57 97 aa17.33■□□□□ 0.36
CPSF1-206ENST00000531480 MAP3K9P80192 1104 aa17.33■□□□□ 0.36
CPSF1-206ENST00000531480 PRKG1Q13976 671 aa17.33■□□□□ 0.36
CPSF1-206ENST00000531480 TTLL12Q14166 644 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-206ENST00000531480 C12orf60Q5U649 245 aa17.33■□□□□ 0.36
CPSF1-206ENST00000531480 CWC27Q6UX04 472 aaKnown RBP17.33■□□□□ 0.36
CPSF1-206ENST00000531480 IFNL3Q8IZI9 196 aa17.33■□□□□ 0.36
CPSF1-206ENST00000531480 IL25Q9H293 177 aa17.33■□□□□ 0.36
CPSF1-206ENST00000531480 ARPP21Q9UBL0 812 aaPredicted RBP17.33■□□□□ 0.36
CPSF1-206ENST00000531480 SERPINB13Q9UIV8 391 aa17.33■□□□□ 0.36
CPSF1-206ENST00000531480 MYH8P13535 1937 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 USP17L12C9JPN9 530 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 USP17L21D6R901 530 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 SLC10A3P09131 477 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 MFAP1P55081 439 aaKnown RBP17.32■□□□□ 0.36
CPSF1-206ENST00000531480 VGLL4Q14135 290 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 VPS53Q5VIR6 699 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 TATDN1Q6P1N9 297 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 DDRGK1Q96HY6 314 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 WRNIP1Q96S55 665 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 SNCAIPQ9Y6H5 919 aa17.32■□□□□ 0.36
CPSF1-206ENST00000531480 PCNTO95613 3336 aa17.31■□□□□ 0.36
CPSF1-206ENST00000531480 LAMA4Q16363 1823 aa17.31■□□□□ 0.36
CPSF1-206ENST00000531480 CTNND1O60716 968 aaKnown RBP17.31■□□□□ 0.36
CPSF1-206ENST00000531480 CAPN15O75808 1086 aa17.31■□□□□ 0.36
CPSF1-206ENST00000531480 HSPD1P10809 573 aaKnown RBP17.31■□□□□ 0.36
CPSF1-206ENST00000531480 INPP5BP32019 993 aa17.31■□□□□ 0.36
CPSF1-206ENST00000531480 EVX2Q03828 476 aa17.31■□□□□ 0.36
CPSF1-206ENST00000531480 RASAL3Q86YV0 1011 aa17.31■□□□□ 0.36
CPSF1-206ENST00000531480 CCDC102AQ96A19 550 aa17.31■□□□□ 0.36
CPSF1-206ENST00000531480 CLMNQ96JQ2 1002 aa17.31■□□□□ 0.36
CPSF1-206ENST00000531480 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.31■□□□□ 0.36
CPSF1-206ENST00000531480 SGSM2O43147 1006 aa17.3■□□□□ 0.36
CPSF1-206ENST00000531480 POLR3DP05423 398 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-206ENST00000531480 CYP2D6P10635 497 aa17.3■□□□□ 0.36
CPSF1-206ENST00000531480 RRP1BQ14684 758 aaKnown RBP17.3■□□□□ 0.36
CPSF1-206ENST00000531480 TNS4Q8IZW8 715 aa17.3■□□□□ 0.36
CPSF1-206ENST00000531480 RUFY2Q8WXA3 655 aa17.3■□□□□ 0.36
CPSF1-206ENST00000531480 ZKSCAN4Q969J2 545 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-206ENST00000531480 NACAP1Q9BZK3 213 aa17.3■□□□□ 0.36
CPSF1-206ENST00000531480 GREB1LQ9C091 1923 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-206ENST00000531480 WDR33Q9C0J8 1336 aaKnown RBP17.29■□□□□ 0.36
CPSF1-206ENST00000531480 FAM196BA6NMK8 535 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 FOXN1O15353 648 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 SHMT1P34896 483 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 CAP2P40123 477 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 ECE1P42892 770 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 ZNF157P51786 506 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-206ENST00000531480 CYP4F22Q6NT55 531 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 C16orf86Q6ZW13 317 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 SCYL3Q8IZE3 742 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 CAPNS2Q96L46 248 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 DSCC1Q9BVC3 393 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 GINM1Q9NU53 330 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 ANAPC4Q9UJX5 808 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 CSADQ9Y600 493 aa17.29■□□□□ 0.36
CPSF1-206ENST00000531480 PTPRFP10586 1907 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 CYP2D7A0A087X1C5 515 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 SPDYE5A6NIY4 337 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 SMIM22K7EJ46 135 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 FGAP02671 866 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 ZBTB48P10074 688 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-206ENST00000531480 SPRYD7Q5W111 196 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 AMOTL1Q8IY63 956 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 CRACR2BQ8N4Y2 399 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-206ENST00000531480 SLC10A4Q96EP9 437 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 NAPBQ9H115 298 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 SWAP70Q9UH65 585 aa17.28■□□□□ 0.36
CPSF1-206ENST00000531480 APPP05067 770 aa17.27■□□□□ 0.36
CPSF1-206ENST00000531480 GJA5P36382 358 aa17.27■□□□□ 0.36
CPSF1-206ENST00000531480 TDO2P48775 406 aa17.27■□□□□ 0.36
CPSF1-206ENST00000531480 NOGQ13253 232 aa17.27■□□□□ 0.36
CPSF1-206ENST00000531480 SLC4A8Q2Y0W8 1093 aa17.27■□□□□ 0.36
CPSF1-206ENST00000531480 ERO1BQ86YB8 467 aa17.27■□□□□ 0.36
CPSF1-206ENST00000531480 WNK4Q96J92 1243 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms