RNA–Protein interactions for RNA: ENST00000529472.1

CHD7-209, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 3

Gene CHD7, Length 788 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-209	ENST00000529472	PI4KB	Q9UBF8	816 aa		13.63	□□□□□ -0.23
CHD7-209	ENST00000529472	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.63	□□□□□ -0.23
CHD7-209	ENST00000529472	ANGEL1	Q9UNK9	670 aa	Known RBP	13.63	□□□□□ -0.23
CHD7-209	ENST00000529472	OTOF	Q9HC10	1997 aa		13.63	□□□□□ -0.23
CHD7-209	ENST00000529472	TMEM88B	A6NKF7	163 aa		13.62	□□□□□ -0.23
CHD7-209	ENST00000529472	SMIM22	K7EJ46	135 aa		13.62	□□□□□ -0.23
CHD7-209	ENST00000529472	APLP1	P51693	650 aa		13.62	□□□□□ -0.23
CHD7-209	ENST00000529472	STK11IP	Q8N1F8	1099 aa		13.62	□□□□□ -0.23
CHD7-209	ENST00000529472	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
CHD7-209	ENST00000529472	ANO2	Q9NQ90	1003 aa		13.62	□□□□□ -0.23
CHD7-209	ENST00000529472	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.62	□□□□□ -0.23
CHD7-209	ENST00000529472	ABT1	Q9ULW3	272 aa	Known RBP	13.62	□□□□□ -0.23
CHD7-209	ENST00000529472	UBE2Q2L	H0YL09	131 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	FGA	P02671	866 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	PTH1R	Q03431	593 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	C12orf60	Q5U649	245 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	KIAA1211	Q6ZU35	1233 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	ARMC9	Q7Z3E5	817 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	DYNLL2	Q96FJ2	89 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	WRNIP1	Q96S55	665 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	DSCC1	Q9BVC3	393 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	ZNF341	Q9BYN7	854 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	DNAJC18	Q9H819	358 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	SERPINB13	Q9UIV8	391 aa		13.61	□□□□□ -0.23
CHD7-209	ENST00000529472	MYH8	P13535	1937 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	LAMA4	Q16363	1823 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	USP2	O75604	605 aa	Predicted RBP	13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	IREB2	P48200	963 aa	Known RBP	13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	HUNK	P57058	714 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	HAND2	P61296	217 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	FKBP1B	P68106	108 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	ALX1	Q15699	326 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	SBK1	Q52WX2	424 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	SLC44A5	Q8NCS7	719 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	EHD4	Q9H223	541 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	HERC5	Q9UII4	1024 aa	Known RBP	13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	ZMYM6	O95789	1325 aa		13.6	□□□□□ -0.23
CHD7-209	ENST00000529472	TBC1D12	O60347	775 aa		13.59	□□□□□ -0.23
CHD7-209	ENST00000529472	HTRA3	P83110	453 aa		13.59	□□□□□ -0.23
CHD7-209	ENST00000529472	PPARA	Q07869	468 aa		13.59	□□□□□ -0.23
CHD7-209	ENST00000529472	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
CHD7-209	ENST00000529472	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD7-209	ENST00000529472	KLRG1	Q96E93	195 aa		13.59	□□□□□ -0.23
CHD7-209	ENST00000529472	LSG1	Q9H089	658 aa	Known RBP	13.59	□□□□□ -0.23
CHD7-209	ENST00000529472	CREBZF	Q9NS37	354 aa		13.59	□□□□□ -0.23
CHD7-209	ENST00000529472	ROBO3	Q96MS0	1386 aa		13.58	□□□□□ -0.23
CHD7-209	ENST00000529472	ATAD5	Q96QE3	1844 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	PHF20L1	A8MW92	1017 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	INPP5B	P32019	993 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	SHMT1	P34896	483 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	MAP3K10	Q02779	954 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	CTDSPL2	Q05D32	466 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	GABPA	Q06546	454 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	VGLL4	Q14135	290 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	C16orf86	Q6ZW13	317 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	SAPCD2	Q86UD0	394 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	METTL16	Q86W50	562 aa	Known RBP	13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	CLMN	Q96JQ2	1002 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	CTNNA3	Q9UI47	895 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	CSAD	Q9Y600	493 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	TLL2	Q9Y6L7	1015 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	DOCK1	Q14185	1865 aa		13.58	□□□□□ -0.24
CHD7-209	ENST00000529472	ZNF213	O14771	459 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	GDF11	O95390	407 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	SLC3A2	P08195	630 aa	Known RBP	13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	HSPA6	P17066	643 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	MAP3K9	P80192	1104 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	RRP1B	Q14684	758 aa	Known RBP	13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	MAP3K11	Q16584	847 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	ANKRD13A	Q8IZ07	590 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	MAP4K1	Q92918	833 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	ELP3	Q9H9T3	547 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	MKNK2	Q9HBH9	465 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	SWAP70	Q9UH65	585 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	ZNF112	Q9UJU3	913 aa		13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	RBM8A	Q9Y5S9	174 aa	Known RBP	13.57	□□□□□ -0.24
CHD7-209	ENST00000529472		U3KPZ7	1027 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD7-209	ENST00000529472	PRDM1	O75626	825 aa		13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	CDK8	P49336	464 aa		13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	IMMT	Q16891	758 aa	Known RBP	13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	CERKL	Q49MI3	558 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	LDLRAD1	Q5T700	205 aa		13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	TBC1D10C	Q8IV04	446 aa		13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	NBPF3	Q9H094	633 aa		13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	ANAPC4	Q9UJX5	808 aa		13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	SNCAIP	Q9Y6H5	919 aa		13.56	□□□□□ -0.24
CHD7-209	ENST00000529472	MPHOSPH10	O00566	681 aa	Known RBP	13.55	□□□□□ -0.24
CHD7-209	ENST00000529472	CTNND1	O60716	968 aa	Known RBP	13.55	□□□□□ -0.24
CHD7-209	ENST00000529472	REC8	O95072	547 aa		13.55	□□□□□ -0.24
CHD7-209	ENST00000529472	CAP2	P40123	477 aa		13.55	□□□□□ -0.24
CHD7-209	ENST00000529472	ZNF157	P51786	506 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD7-209	ENST00000529472	PDE4B	Q07343	736 aa		13.55	□□□□□ -0.24
CHD7-209	ENST00000529472	GRM1	Q13255	1194 aa		13.55	□□□□□ -0.24
CHD7-209	ENST00000529472	RRP12	Q5JTH9	1297 aa	Known RBP	13.55	□□□□□ -0.24
CHD7-209	ENST00000529472	TATDN1	Q6P1N9	297 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms