RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.82■■□□□ 1.56
CD44-222ENST00000526025 LAMA4Q16363 1823 aa24.82■■□□□ 1.56
CD44-222ENST00000526025 DOCK1Q14185 1865 aa24.81■■□□□ 1.56
CD44-222ENST00000526025 RASSF10A6NK89 507 aa24.81■■□□□ 1.56
CD44-222ENST00000526025 FOXP2O15409 715 aa24.81■■□□□ 1.56
CD44-222ENST00000526025 CDC45O75419 566 aa24.81■■□□□ 1.56
CD44-222ENST00000526025 HUNKP57058 714 aa24.81■■□□□ 1.56
CD44-222ENST00000526025 C12orf60Q5U649 245 aa24.81■■□□□ 1.56
CD44-222ENST00000526025 SERPINB13Q9UIV8 391 aa24.81■■□□□ 1.56
CD44-222ENST00000526025 ABT1Q9ULW3 272 aaKnown RBP24.81■■□□□ 1.56
CD44-222ENST00000526025 ATAD5Q96QE3 1844 aa24.81■■□□□ 1.56
CD44-222ENST00000526025 ROBO3Q96MS0 1386 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 USP17L12C9JPN9 530 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 USP17L21D6R901 530 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 SGSM2O43147 1006 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 APPP05067 770 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 HSPD1P10809 573 aaKnown RBP24.8■■□□□ 1.56
CD44-222ENST00000526025 TDO2P48775 406 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 CTR9Q6PD62 1173 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 CASC1Q6TDU7 716 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 MIGA2Q7L4E1 593 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 ANKRD13AQ8IZ07 590 aa24.8■■□□□ 1.56
CD44-222ENST00000526025 PHF20L1A8MW92 1017 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 UBE2Q2LH0YL09 131 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 PLCD1P51178 756 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 MAP3K9P80192 1104 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 GABPAQ06546 454 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 PRKG1Q13976 671 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 VPS53Q5VIR6 699 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 DSCC1Q9BVC3 393 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 NAPBQ9H115 298 aa24.79■■□□□ 1.56
CD44-222ENST00000526025 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.79■■□□□ 1.56
CD44-222ENST00000526025 NOL9Q5SY16 702 aaKnown RBP24.78■■□□□ 1.56
CD44-222ENST00000526025 MOB2Q70IA6 237 aa24.78■■□□□ 1.56
CD44-222ENST00000526025 CRACR2BQ8N4Y2 399 aaPredicted RBP24.78■■□□□ 1.56
CD44-222ENST00000526025 WRNIP1Q96S55 665 aa24.78■■□□□ 1.56
CD44-222ENST00000526025 TRIM34Q9BYJ4 488 aa24.78■■□□□ 1.56
CD44-222ENST00000526025 DNAJC18Q9H819 358 aa24.78■■□□□ 1.56
CD44-222ENST00000526025 SWAP70Q9UH65 585 aa24.78■■□□□ 1.56
CD44-222ENST00000526025 PPP1R3FQ6ZSY5 799 aaPredicted RBP24.77■■□□□ 1.56
CD44-222ENST00000526025 IL25Q9H293 177 aa24.77■■□□□ 1.56
CD44-222ENST00000526025 FZD1Q9UP38 647 aa24.77■■□□□ 1.56
CD44-222ENST00000526025 CTNND1O60716 968 aaKnown RBP24.76■■□□□ 1.55
CD44-222ENST00000526025 RGMBQ6NW40 437 aa24.76■■□□□ 1.55
CD44-222ENST00000526025 TATDN1Q6P1N9 297 aa24.76■■□□□ 1.55
CD44-222ENST00000526025 ESYT1Q9BSJ8 1104 aa24.76■■□□□ 1.55
CD44-222ENST00000526025 GINM1Q9NU53 330 aa24.76■■□□□ 1.55
CD44-222ENST00000526025 CSADQ9Y600 493 aa24.76■■□□□ 1.55
CD44-222ENST00000526025 CYP2D6P10635 497 aa24.75■■□□□ 1.55
CD44-222ENST00000526025 VGLL4Q14135 290 aa24.75■■□□□ 1.55
CD44-222ENST00000526025 DEFB115Q30KQ5 88 aa24.75■■□□□ 1.55
CD44-222ENST00000526025 FGAP02671 866 aa24.74■■□□□ 1.55
CD44-222ENST00000526025 C16orf86Q6ZW13 317 aa24.74■■□□□ 1.55
CD44-222ENST00000526025 CCDC102AQ96A19 550 aa24.74■■□□□ 1.55
CD44-222ENST00000526025 ANAPC4Q9UJX5 808 aa24.74■■□□□ 1.55
CD44-222ENST00000526025 THSD7BQ9C0I4 1608 aa24.74■■□□□ 1.55
CD44-222ENST00000526025 PHIPQ8WWQ0 1821 aa24.73■■□□□ 1.55
CD44-222ENST00000526025 SLC4A8Q2Y0W8 1093 aa24.73■■□□□ 1.55
CD44-222ENST00000526025 SCYL3Q8IZE3 742 aa24.73■■□□□ 1.55
CD44-222ENST00000526025 CTNNA3Q9UI47 895 aa24.73■■□□□ 1.55
CD44-222ENST00000526025 SNCAIPQ9Y6H5 919 aa24.73■■□□□ 1.55
CD44-222ENST00000526025 CYP2D7A0A087X1C5 515 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 FAM196BA6NMK8 535 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 MINDY4BA8MYZ0 360 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 SLC3A2P08195 630 aaKnown RBP24.72■■□□□ 1.55
CD44-222ENST00000526025 INPP5BP32019 993 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 SHMT1P34896 483 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 CAP2P40123 477 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 ECE1P42892 770 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 PPARAQ07869 468 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 ZNF287Q9HBT7 754 aa24.72■■□□□ 1.55
CD44-222ENST00000526025 SLC10A3P09131 477 aa24.71■■□□□ 1.55
CD44-222ENST00000526025 SLURP2P0DP57 97 aa24.71■■□□□ 1.55
CD44-222ENST00000526025 ZNF157P51786 506 aaPredicted RBP24.71■■□□□ 1.55
CD44-222ENST00000526025 EVX2Q03828 476 aa24.71■■□□□ 1.55
CD44-222ENST00000526025 RASAL3Q86YV0 1011 aa24.71■■□□□ 1.55
CD44-222ENST00000526025 ZKSCAN4Q969J2 545 aaPredicted RBP24.71■■□□□ 1.55
CD44-222ENST00000526025 SLC10A4Q96EP9 437 aa24.71■■□□□ 1.55
CD44-222ENST00000526025 CLMNQ96JQ2 1002 aa24.71■■□□□ 1.55
CD44-222ENST00000526025 SPDYE5A6NIY4 337 aa24.7■■□□□ 1.54
CD44-222ENST00000526025 ZBTB48P10074 688 aaPredicted RBP24.7■■□□□ 1.54
CD44-222ENST00000526025 CDK8P49336 464 aa24.7■■□□□ 1.54
CD44-222ENST00000526025 HTRA3P83110 453 aa24.7■■□□□ 1.54
CD44-222ENST00000526025 KIAA1211Q6ZU35 1233 aa24.7■■□□□ 1.54
CD44-222ENST00000526025 CCDC17Q96LX7 622 aa24.7■■□□□ 1.54
CD44-222ENST00000526025 TBC1D2Q9BYX2 928 aa24.7■■□□□ 1.54
CD44-222ENST00000526025 GREB1LQ9C091 1923 aaPredicted RBP24.7■■□□□ 1.54
CD44-222ENST00000526025 FAM155AB1AL88 458 aaPredicted RBP24.69■■□□□ 1.54
CD44-222ENST00000526025 ASNSP08243 561 aa24.69■■□□□ 1.54
CD44-222ENST00000526025 PCP11498 1178 aaKnown RBP24.69■■□□□ 1.54
CD44-222ENST00000526025 CERKLQ49MI3 558 aaPredicted RBP24.69■■□□□ 1.54
CD44-222ENST00000526025 ERO1BQ86YB8 467 aa24.69■■□□□ 1.54
CD44-222ENST00000526025 MAP4K1Q92918 833 aa24.69■■□□□ 1.54
CD44-222ENST00000526025 DYNLL2Q96FJ2 89 aa24.69■■□□□ 1.54
CD44-222ENST00000526025 CAPNS2Q96L46 248 aa24.69■■□□□ 1.54
CD44-222ENST00000526025 PICK1Q9NRD5 415 aa24.69■■□□□ 1.54
CD44-222ENST00000526025 U3KPZ7 1027 aaPredicted RBP24.69■■□□□ 1.54
CD44-222ENST00000526025 FGRP09769 529 aa24.68■■□□□ 1.54
CD44-222ENST00000526025 NT5C2P49902 561 aa24.68■■□□□ 1.54
CD44-222ENST00000526025 PPATQ06203 517 aa24.68■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms