RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 USP17L5A8MUK1 530 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 DLL1O00548 723 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 GDF11O95390 407 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 G3BP1Q13283 466 aaKnown RBP eCLIP8.12□□□□□ -1.11
CD44-221ENST00000526000 MVPQ14764 893 aaKnown RBP8.12□□□□□ -1.11
CD44-221ENST00000526000 NECAB2Q7Z6G3 386 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 MAPKAPK5Q8IW41 473 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 SPATA5Q8NB90 893 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 ZNF280CQ8ND82 737 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 PXYLP1Q8TE99 480 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 TGFBRAP1Q8WUH2 860 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 FRAT1Q92837 279 aaPredicted RBP8.12□□□□□ -1.11
CD44-221ENST00000526000 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.12□□□□□ -1.11
CD44-221ENST00000526000 BCL11AQ9H165 835 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 SAP30BPQ9UHR5 308 aaKnown RBP8.12□□□□□ -1.11
CD44-221ENST00000526000 FBXO3Q9UK99 471 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 GJD2Q9UKL4 321 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 AKAP2Q9Y2D5 859 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 NDUFB9Q9Y6M9 179 aa8.12□□□□□ -1.11
CD44-221ENST00000526000 PNMA6EA0A0J9YXQ4 647 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 CAP2P40123 477 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 IRX3P78415 501 aaPredicted RBP8.11□□□□□ -1.11
CD44-221ENST00000526000 IRF5Q13568 498 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 Q3C1V9 767 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 Q7L0L9 218 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 NSUN4Q96CB9 384 aaKnown RBP8.11□□□□□ -1.11
CD44-221ENST00000526000 PAGR1Q9BTK6 254 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 OSBPL5Q9H0X9 879 aaPredicted RBP8.11□□□□□ -1.11
CD44-221ENST00000526000 PRO3102Q9H379 93 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 HMX1Q9NP08 348 aaPredicted RBP8.11□□□□□ -1.11
CD44-221ENST00000526000 AATFQ9NY61 560 aaKnown RBP eCLIP8.11□□□□□ -1.11
CD44-221ENST00000526000 PALD1Q9ULE6 856 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 SLC45A1Q9Y2W3 748 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 ARAP2Q8WZ64 1704 aa8.11□□□□□ -1.11
CD44-221ENST00000526000 MKI67P46013 3256 aaKnown RBP8.11□□□□□ -1.11
CD44-221ENST00000526000 HTTP42858 3142 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 TBC1D12O60347 775 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 BCAR3O75815 825 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 GNAI3P08754 354 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 MCAMP43121 646 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 RARSP54136 660 aaKnown RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 DYNLL1P63167 89 aaKnown RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 GSTO1P78417 241 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 OS9Q13438 667 aaPredicted RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 MTMR2Q13614 643 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 ZYXQ15942 572 aaKnown RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 CCL14Q16627 93 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 FAM110CQ1W6H9 321 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 TTC39AQ5SRH9 613 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 CCAR1Q8IX12 1150 aaKnown RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 TRMT2AQ8IZ69 625 aaKnown RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 CRACR2BQ8N4Y2 399 aaPredicted RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 NOL10Q9BSC4 688 aaKnown RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 TRIM34Q9BYJ4 488 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 CRISPLD2Q9H0B8 497 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 TXNRD2Q9NNW7 524 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 PAK6Q9NQU5 681 aaPredicted RBP8.1□□□□□ -1.11
CD44-221ENST00000526000 TMOD4Q9NZQ9 345 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 PNMA3Q9UL41 463 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 HDAC5Q9UQL6 1122 aa8.1□□□□□ -1.11
CD44-221ENST00000526000 HMGCRP04035 888 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 GCLCP48506 637 aaPredicted RBP8.09□□□□□ -1.11
CD44-221ENST00000526000 PABPC4Q13310 644 aaKnown RBP eCLIP8.09□□□□□ -1.11
CD44-221ENST00000526000 WDR78Q5VTH9 848 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 NAA16Q6N069 864 aaPredicted RBP8.09□□□□□ -1.11
CD44-221ENST00000526000 MIER1Q8N108 512 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 PROCA1Q8NCQ7 364 aaPredicted RBP8.09□□□□□ -1.11
CD44-221ENST00000526000 TRIB2Q92519 343 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 DBNDD2Q9BQY9 259 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 NBPF3Q9H094 633 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 C11orf49Q9H6J7 331 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 C1orf115Q9H7X2 142 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 AS3MTQ9HBK9 375 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 CWC22Q9HCG8 908 aaKnown RBP8.09□□□□□ -1.11
CD44-221ENST00000526000 RBPJLQ9UBG7 517 aa8.09□□□□□ -1.11
CD44-221ENST00000526000 RPTORQ8N122 1335 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 BAG3O95817 575 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 GNAI2P04899 355 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 PRKAR2AP13861 404 aaKnown RBP8.08□□□□□ -1.12
CD44-221ENST00000526000 CCND3P30281 292 aaPredicted RBP8.08□□□□□ -1.12
CD44-221ENST00000526000 MAGEA10P43363 369 aaPredicted RBP8.08□□□□□ -1.12
CD44-221ENST00000526000 ZAP70P43403 619 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 MNX1P50219 401 aaPredicted RBP8.08□□□□□ -1.12
CD44-221ENST00000526000 BACE1P56817 501 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 MDM2Q00987 491 aaPredicted RBP8.08□□□□□ -1.12
CD44-221ENST00000526000 SH3D19Q5HYK7 790 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 ADGRA1Q86SQ6 560 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 DEFB123Q8N688 67 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 MIGA1Q8NAN2 632 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 GPRC5AQ8NFJ5 357 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 GDF15Q99988 308 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 NUDT12Q9BQG2 462 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 UBE2OQ9C0C9 1292 aaKnown RBP8.08□□□□□ -1.12
CD44-221ENST00000526000 CCDC8Q9H0W5 538 aaPredicted RBP8.08□□□□□ -1.12
CD44-221ENST00000526000 PORCNQ9H237 461 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 PIH1D3Q9NQM4 214 aaKnown RBP8.08□□□□□ -1.12
CD44-221ENST00000526000 EMILIN3Q9NT22 766 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 PI4KBQ9UBF8 816 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 DOCK3Q8IZD9 2030 aa8.08□□□□□ -1.12
CD44-221ENST00000526000 USP17L10C9JJH3 530 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms