RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ID3Q02535 119 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 MLECQ14165 292 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 BMS1Q14692 1282 aaKnown RBP6.86□□□□□ -1.31
CD44-220ENST00000525688 DUOXA2Q1HG44 320 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 LCE2AQ5TA79 106 aaPredicted RBP6.86□□□□□ -1.31
CD44-220ENST00000525688 INTS3Q68E01 1043 aaKnown RBP6.86□□□□□ -1.31
CD44-220ENST00000525688 TREML4Q6UXN2 200 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 MRFAP1L1Q96HT8 127 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 WNT10AQ9GZT5 417 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 SUGCTQ9HAC7 445 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 RRAGCQ9HB90 399 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 RAD18Q9NS91 495 aa6.86□□□□□ -1.31
CD44-220ENST00000525688 GNB5O14775 395 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 TMPRSS2O15393 492 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 PLCG1P19174 1290 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 RASA3Q14644 834 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 CDCP2Q5VXM1 449 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 IGF2-ASQ6U949 168 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 KIAA1211Q6ZU35 1233 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 C12orf40Q86WS4 652 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 SVOPQ8N4V2 548 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 CELF2-AS1Q8N7Q2 184 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 SMG8Q8ND04 991 aaKnown RBP6.85□□□□□ -1.31
CD44-220ENST00000525688 UBASH3BQ8TF42 649 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 ZNF775Q96BV0 537 aaPredicted RBP6.85□□□□□ -1.31
CD44-220ENST00000525688 PLVAPQ9BX97 442 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 CCDC113Q9H0I3 377 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 RNF208Q9H0X6 261 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 TNKS2Q9H2K2 1166 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 ANTXR1Q9H6X2 564 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 CRIM1Q9NZV1 1036 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 PPP1R9AQ9ULJ8 1098 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 HIF3AQ9Y2N7 669 aa6.85□□□□□ -1.31
CD44-220ENST00000525688 SLC22A31A6NKX4 558 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 WISP1O95388 367 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 ELNP15502 786 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 GUCY2CP25092 1073 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 GRK4P32298 578 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 SNRPNP63162 240 aaKnown RBP6.84□□□□□ -1.31
CD44-220ENST00000525688 FXNQ16595 210 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 DDR2Q16832 855 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 ZBTB37Q5TC79 503 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 RUFY4Q6ZNE9 571 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 ZSCAN1Q8NBB4 408 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 ATG4CQ96DT6 458 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 RUSC1Q9BVN2 902 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 MRPL18Q9H0U6 180 aaKnown RBP6.84□□□□□ -1.31
CD44-220ENST00000525688 CNNM2Q9H8M5 875 aa6.84□□□□□ -1.31
CD44-220ENST00000525688 A0A1W2PQH9 124 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 PRAMEF27A3QJZ7 478 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 TNFRSF10CO14798 259 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 DNAJA2O60884 412 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 PGRP06401 933 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 NME1P15531 152 aaKnown RBP6.83□□□□□ -1.32
CD44-220ENST00000525688 NTF4P34130 210 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 TRIM28Q13263 835 aaKnown RBP6.83□□□□□ -1.32
CD44-220ENST00000525688 OVOS1Q6IE37 1185 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 TMEM130Q8N3G9 435 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 RNF214Q8ND24 703 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 FANCD2OSQ96PS1 177 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 DEPDC7Q96QD5 511 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 SRPK1Q96SB4 655 aaKnown RBP6.83□□□□□ -1.32
CD44-220ENST00000525688 GSX1Q9H4S2 264 aaPredicted RBP6.83□□□□□ -1.32
CD44-220ENST00000525688 CYP4F12Q9HCS2 524 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 DISC1Q9NRI5 854 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 SNTG2Q9NY99 539 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 MKL2Q9ULH7 1088 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 SLC12A7Q9Y666 1083 aa6.83□□□□□ -1.32
CD44-220ENST00000525688 TIAF1O95411 115 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 SOX4Q06945 474 aaPredicted RBP6.82□□□□□ -1.32
CD44-220ENST00000525688 AKAP4Q5JQC9 854 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 PPM1JQ5JR12 505 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 NUTM2GQ5VZR2 741 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 ACAD11Q709F0 780 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 NLRC3Q7RTR2 1065 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.82□□□□□ -1.32
CD44-220ENST00000525688 TTC6Q86TZ1 520 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 MCATQ8IVS2 390 aaKnown RBP6.82□□□□□ -1.32
CD44-220ENST00000525688 SLFN12Q8IYM2 578 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 ZNF507Q8TCN5 953 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 ACSF2Q96CM8 615 aaPredicted RBP6.82□□□□□ -1.32
CD44-220ENST00000525688 ATXN3LQ9H3M9 355 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 CSADQ9Y600 493 aa6.82□□□□□ -1.32
CD44-220ENST00000525688 UNC13AQ9UPW8 1703 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 WIPF1O43516 503 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 ACRP10323 421 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 ADH5P11766 374 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 CAP2P40123 477 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 ETF1P62495 437 aaKnown RBP6.81□□□□□ -1.32
CD44-220ENST00000525688 RASGRF1Q13972 1273 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 PPP2R5EQ16537 467 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 SLC6A19Q695T7 634 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 SDE2Q6IQ49 451 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 JAZF1Q86VZ6 243 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 HID1Q8IV36 788 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 MRPL41Q8IXM3 137 aaKnown RBP6.81□□□□□ -1.32
CD44-220ENST00000525688 NLGN1Q8N2Q7 840 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 KCT2Q8NC54 265 aa6.81□□□□□ -1.32
CD44-220ENST00000525688 NOP53Q9NZM5 478 aaKnown RBP6.81□□□□□ -1.32
CD44-220ENST00000525688 TJP2Q9UDY2 1190 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms