RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 NME1P15531 152 aaKnown RBP10.68□□□□□ -0.7
LSM1-202ENST00000520286 CD68P34810 354 aaPredicted RBP10.68□□□□□ -0.7
LSM1-202ENST00000520286 PLEKHG4Q58EX7 1191 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 ZC3H12AQ5D1E8 599 aaKnown RBP10.68□□□□□ -0.7
LSM1-202ENST00000520286 TMEM201Q5SNT2 666 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 NLRC3Q7RTR2 1065 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 SLC16A10Q8TF71 515 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 ATG4CQ96DT6 458 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 WDR18Q9BV38 432 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 FANCLQ9NW38 375 aa10.68□□□□□ -0.7
LSM1-202ENST00000520286 OIP5O43482 229 aa10.67□□□□□ -0.7
LSM1-202ENST00000520286 DNAJA2O60884 412 aa10.67□□□□□ -0.7
LSM1-202ENST00000520286 AMPD1P23109 780 aa10.67□□□□□ -0.7
LSM1-202ENST00000520286 GRK4P32298 578 aa10.67□□□□□ -0.7
LSM1-202ENST00000520286 INTS3Q68E01 1043 aaKnown RBP10.67□□□□□ -0.7
LSM1-202ENST00000520286 KLHL3Q9UH77 587 aa10.67□□□□□ -0.7
LSM1-202ENST00000520286 ADAM30Q9UKF2 790 aa10.67□□□□□ -0.7
LSM1-202ENST00000520286 PCDHGC5Q9Y5F6 944 aa10.67□□□□□ -0.7
LSM1-202ENST00000520286 SHISA8B8ZZ34 492 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 TERTO14746 1132 aaKnown RBP10.66□□□□□ -0.7
LSM1-202ENST00000520286 DLGAP3O95886 979 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 PGRP06401 933 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 ACRP10323 421 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 NID1P14543 1247 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 FOXD4L6Q3SYB3 417 aaPredicted RBP10.66□□□□□ -0.7
LSM1-202ENST00000520286 RNF187Q5TA31 235 aaPredicted RBP10.66□□□□□ -0.7
LSM1-202ENST00000520286 FOXD4L3Q6VB84 417 aaPredicted RBP10.66□□□□□ -0.7
LSM1-202ENST00000520286 UNC5AQ6ZN44 842 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 ILDR2Q71H61 639 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 APPBP2Q92624 585 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 CNNM2Q9H8M5 875 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 RAD18Q9NS91 495 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 HIF3AQ9Y2N7 669 aa10.66□□□□□ -0.7
LSM1-202ENST00000520286 ESYT3A0FGR9 886 aa10.65□□□□□ -0.7
LSM1-202ENST00000520286 ETF1P62495 437 aaKnown RBP10.65□□□□□ -0.7
LSM1-202ENST00000520286 ZYXQ15942 572 aaKnown RBP10.65□□□□□ -0.7
LSM1-202ENST00000520286 CDCP2Q5VXM1 449 aa10.65□□□□□ -0.7
LSM1-202ENST00000520286 HOMER1Q86YM7 354 aa10.65□□□□□ -0.7
LSM1-202ENST00000520286 WNT10AQ9GZT5 417 aa10.65□□□□□ -0.7
LSM1-202ENST00000520286 PICK1Q9NRD5 415 aa10.65□□□□□ -0.7
LSM1-202ENST00000520286 KCNK4Q9NYG8 393 aa10.65□□□□□ -0.7
LSM1-202ENST00000520286 UPK3BL1B0FP48 263 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 UPK3BL2E5RIL1 263 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 TNFRSF10CO14798 259 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 DEAF1O75398 565 aaPredicted RBP10.64□□□□□ -0.71
LSM1-202ENST00000520286 BCRP11274 1271 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 RING1Q06587 406 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 COL9A3Q14050 684 aaPredicted RBP10.64□□□□□ -0.71
LSM1-202ENST00000520286 ARSHQ5FYA8 562 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 MRM1Q6IN84 353 aaKnown RBP10.64□□□□□ -0.71
LSM1-202ENST00000520286 VHLLQ6RSH7 139 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 ST13P5Q8NFI4 369 aaPredicted RBP10.64□□□□□ -0.71
LSM1-202ENST00000520286 DCAF11Q8TEB1 546 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 SLC9A7Q96T83 725 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 LRRC4BQ9NT99 713 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 PFDN2Q9UHV9 154 aa10.64□□□□□ -0.71
LSM1-202ENST00000520286 KDM2BQ8NHM5 1336 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 SYNGAP1Q96PV0 1343 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 LTBP3Q9NS15 1303 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 CHURC1-FNTBB4DL54 471 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 ERVK-24P63145 666 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 ID3Q02535 119 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 PTPROQ16827 1216 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 C2orf27AQ580R0 203 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 PPM1JQ5JR12 505 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 EXOSC6Q5RKV6 272 aaKnown RBP10.63□□□□□ -0.71
LSM1-202ENST00000520286 SPATC1Q76KD6 591 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 THAP3Q8WTV1 239 aaPredicted RBP10.63□□□□□ -0.71
LSM1-202ENST00000520286 IRF7Q92985 503 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 ACSF2Q96CM8 615 aaPredicted RBP10.63□□□□□ -0.71
LSM1-202ENST00000520286 GPATCH3Q96I76 525 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 SLKQ9H2G2 1235 aaPredicted RBP10.63□□□□□ -0.71
LSM1-202ENST00000520286 PHAXQ9H814 394 aaKnown RBP10.63□□□□□ -0.71
LSM1-202ENST00000520286 TMEM260Q9NX78 707 aa10.63□□□□□ -0.71
LSM1-202ENST00000520286 FAM86C2PA6NEL3 165 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 SQSTM1Q13501 440 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 NCAPHQ15003 741 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 EEPD1Q7L9B9 569 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 DTWD1Q8N5C7 304 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 UBASH3BQ8TF42 649 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 ZMYM5Q9UJ78 669 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 PCDHB10Q9UN67 800 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 LEMD3Q9Y2U8 911 aa10.62□□□□□ -0.71
LSM1-202ENST00000520286 TMPRSS2O15393 492 aa10.61□□□□□ -0.71
LSM1-202ENST00000520286 DIAPH1O60610 1272 aaKnown RBP10.61□□□□□ -0.71
LSM1-202ENST00000520286 SLURP2P0DP57 97 aa10.61□□□□□ -0.71
LSM1-202ENST00000520286 RAG1P15918 1043 aa10.61□□□□□ -0.71
LSM1-202ENST00000520286 SSRP1Q08945 709 aaKnown RBP10.61□□□□□ -0.71
LSM1-202ENST00000520286 AKAP4Q5JQC9 854 aa10.61□□□□□ -0.71
LSM1-202ENST00000520286 TRAPPC3LQ5T215 181 aa10.61□□□□□ -0.71
LSM1-202ENST00000520286 ZBTB37Q5TC79 503 aa10.61□□□□□ -0.71
LSM1-202ENST00000520286 ZNF669Q96BR6 464 aaPredicted RBP10.61□□□□□ -0.71
LSM1-202ENST00000520286 FANCGO15287 622 aa10.6□□□□□ -0.71
LSM1-202ENST00000520286 DUOXA2Q1HG44 320 aa10.6□□□□□ -0.71
LSM1-202ENST00000520286 FILIP1Q7Z7B0 1213 aa10.6□□□□□ -0.71
LSM1-202ENST00000520286 JMYQ8N9B5 988 aa10.6□□□□□ -0.71
LSM1-202ENST00000520286 FAM13CQ8NE31 585 aa10.6□□□□□ -0.71
LSM1-202ENST00000520286 TJP2Q9UDY2 1190 aa10.6□□□□□ -0.71
LSM1-202ENST00000520286 PPP1R9AQ9ULJ8 1098 aa10.6□□□□□ -0.71
LSM1-202ENST00000520286 YARSP54577 528 aaKnown RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms