RNA–Protein interactions for RNA: ENST00000515711.1

LMNA-224, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-224	ENST00000515711	C7orf43	Q8WVR3	580 aa		14	□□□□□ -0.17
LMNA-224	ENST00000515711	UBAC1	Q9BSL1	405 aa		14	□□□□□ -0.17
LMNA-224	ENST00000515711	LY9	Q9HBG7	655 aa		14	□□□□□ -0.17
LMNA-224	ENST00000515711	MTMR6	Q9Y217	621 aa		14	□□□□□ -0.17
LMNA-224	ENST00000515711	VPS37C	A5D8V6	355 aa	Predicted RBP	13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	CCDC69	A6NI79	296 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	USP17L12	C9JPN9	530 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	USP17L21	D6R901	530 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	CPLX1	O14810	134 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	TRAK2	O60296	914 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	METAP2	P50579	478 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	TGFB2	P61812	414 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	WTAP	Q15007	396 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	RRP12	Q5JTH9	1297 aa	Known RBP	13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	APOA5	Q6Q788	366 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	NFXL1	Q6ZNB6	911 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	IQCA1	Q86XH1	822 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	RTKN2	Q8IZC4	609 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	TTLL6	Q8N841	843 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	IGDCC4	Q8TDY8	1250 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	ZNF287	Q9HBT7	754 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	ZSWIM5	Q9P217	1185 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	ADAMTSL1	Q8N6G6	1762 aa		13.99	□□□□□ -0.17
LMNA-224	ENST00000515711	FER1L6	Q2WGJ9	1857 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	ZBTB43	O43298	467 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	KIAA2012	Q0VF49	1180 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	PPP2R5B	Q15173	497 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	DIXDC1	Q155Q3	683 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	STRIP1	Q5VSL9	837 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	FBXW7	Q969H0	707 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	PSMD1	Q99460	953 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	VPS33B	Q9H267	617 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	MCM9	Q9NXL9	1143 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	BRPF3	Q9ULD4	1205 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	SLC12A7	Q9Y666	1083 aa		13.98	□□□□□ -0.17
LMNA-224	ENST00000515711	CCDC196	A0A1B0GTZ2	297 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711		H3BQV1	296 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	ECE2	O60344	883 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	JAK2	O60674	1132 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	CTCF	P49711	727 aa	Predicted RBP	13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	CCT2	P78371	535 aa	Known RBP	13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	GRIK5	Q16478	980 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	CCDC178	Q5BJE1	867 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	OLFM4	Q6UX06	510 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	TEX11	Q8IYF3	940 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	TMEM87A	Q8NBN3	555 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	MRI	Q9BWK5	157 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	HPS5	Q9UPZ3	1129 aa		13.97	□□□□□ -0.17
LMNA-224	ENST00000515711	TNKS	O95271	1327 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	STK36	Q9NRP7	1315 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	GOLGA8A	A7E2F4	631 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	CTDNEP1	O95476	244 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	MBD3	O95983	291 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	LBX1	P52954	281 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	HDLBP	Q00341	1268 aa	Known RBP	13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	DOK7	Q18PE1	504 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	KLHL40	Q2TBA0	621 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	C12orf60	Q5U649	245 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	HHIPL2	Q6UWX4	724 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	TEKT1	Q969V4	418 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	NCOA5	Q9HCD5	579 aa	Known RBP	13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	GPHN	Q9NQX3	736 aa	Predicted RBP	13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	TTF2	Q9UNY4	1162 aa	Known RBP	13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	DAGLA	Q9Y4D2	1042 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	TACC3	Q9Y6A5	838 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	ARFGEF1	Q9Y6D6	1849 aa		13.96	□□□□□ -0.17
LMNA-224	ENST00000515711	FLT1	P17948	1338 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	MYO3B	Q8WXR4	1341 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	CCDC85C	A6NKD9	419 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	CALM1	P0DP23	149 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	CALM2	P0DP24	149 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	CALM3	P0DP25	149 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	KCNA3	P22001	575 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	RHBDL3	P58872	404 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	CDC37L1	Q7L3B6	337 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	MICU3	Q86XE3	530 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	TGFBRAP1	Q8WUH2	860 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	DBNDD1	Q9H9R9	158 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	LMBRD1	Q9NUN5	540 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	TAOK2	Q9UL54	1235 aa		13.95	□□□□□ -0.18
LMNA-224	ENST00000515711	USP17L3	A6NCW0	530 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	USP17L4	A6NCW7	530 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	PPIP5K2	O43314	1243 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	RANBP6	O60518	1105 aa	Known RBP	13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	DDAH1	O94760	285 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	POLR3D	P05423	398 aa	Predicted RBP	13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	NCL	P19338	710 aa	Known RBP	13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	KRT85	P78386	507 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	GSE1	Q14687	1217 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	SEC23A	Q15436	765 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	USP17L1	Q7RTZ2	530 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	CERS5	Q8N5B7	392 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	WASF1	Q92558	559 aa		13.94	□□□□□ -0.18
LMNA-224	ENST00000515711	DDX11	Q96FC9	970 aa		13.94	□□□□□ -0.18

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