RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 PTCH2Q9Y6C5 1203 aa21.35■■□□□ 1.01
DDX41-217ENST00000515562 FAM196BA6NMK8 535 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 SLURP2P0DP57 97 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 GPAT2Q6NUI2 795 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 ADGRA1Q86SQ6 560 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 NBPF11Q86T75 865 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 RHPN1Q8TCX5 695 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 TBC1D2Q9BYX2 928 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 ARHGAP39Q9C0H5 1083 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 ZBTB40Q9NUA8 1239 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 PI4KBQ9UBF8 816 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 COG6Q9Y2V7 657 aa21.34■■□□□ 1.01
DDX41-217ENST00000515562 FLT1P17948 1338 aa21.33■■□□□ 1.01
DDX41-217ENST00000515562 TRIM75PA6NK02 468 aa21.33■■□□□ 1.01
DDX41-217ENST00000515562 IDH1O75874 414 aaKnown RBP21.33■■□□□ 1.01
DDX41-217ENST00000515562 GADL1Q6ZQY3 521 aa21.33■■□□□ 1.01
DDX41-217ENST00000515562 SIPA1L1O43166 1804 aa21.33■■□□□ 1.01
DDX41-217ENST00000515562 CLASRPQ8N2M8 674 aaKnown RBP21.32■■□□□ 1
DDX41-217ENST00000515562 TGFBRAP1Q8WUH2 860 aa21.32■■□□□ 1
DDX41-217ENST00000515562 KIF1BPQ96EK5 621 aa21.32■■□□□ 1
DDX41-217ENST00000515562 ZNF333Q96JL9 665 aa21.32■■□□□ 1
DDX41-217ENST00000515562 LOC285556D6RIA3 1793 aa21.32■■□□□ 1
DDX41-217ENST00000515562 CENPFP49454 3210 aa21.32■■□□□ 1
DDX41-217ENST00000515562 PDE4DIPQ5VU43 2346 aa21.31■■□□□ 1
DDX41-217ENST00000515562 CYP2C8P10632 490 aa21.31■■□□□ 1
DDX41-217ENST00000515562 CYP7A1P22680 504 aa21.31■■□□□ 1
DDX41-217ENST00000515562 CAP2P40123 477 aa21.31■■□□□ 1
DDX41-217ENST00000515562 MAP3K12Q12852 859 aa21.31■■□□□ 1
DDX41-217ENST00000515562 MAPKAPK5Q8IW41 473 aa21.31■■□□□ 1
DDX41-217ENST00000515562 IL1RAPL2Q9NP60 686 aa21.31■■□□□ 1
DDX41-217ENST00000515562 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.31■■□□□ 1
DDX41-217ENST00000515562 AGTPBP1Q9UPW5 1226 aa21.31■■□□□ 1
DDX41-217ENST00000515562 BCRP11274 1271 aa21.3■■□□□ 1
DDX41-217ENST00000515562 PSMC4P43686 418 aa21.3■■□□□ 1
DDX41-217ENST00000515562 PROCA1Q8NCQ7 364 aaPredicted RBP21.3■■□□□ 1
DDX41-217ENST00000515562 ZNF280CQ8ND82 737 aa21.3■■□□□ 1
DDX41-217ENST00000515562 TRIM34Q9BYJ4 488 aa21.3■■□□□ 1
DDX41-217ENST00000515562 POTEFA5A3E0 1075 aa21.29■■□□□ 1
DDX41-217ENST00000515562 HLA-DOAP06340 250 aa21.29■■□□□ 1
DDX41-217ENST00000515562 HOXD10P28358 340 aa21.29■■□□□ 1
DDX41-217ENST00000515562 TTF1Q15361 905 aaPredicted RBP21.29■■□□□ 1
DDX41-217ENST00000515562 CCDC84Q86UT8 332 aaPredicted RBP21.29■■□□□ 1
DDX41-217ENST00000515562 METTL16Q86W50 562 aaKnown RBP21.29■■□□□ 1
DDX41-217ENST00000515562 MAGEB6Q8N7X4 407 aa21.29■■□□□ 1
DDX41-217ENST00000515562 SMCR8Q8TEV9 937 aaPredicted RBP21.29■■□□□ 1
DDX41-217ENST00000515562 TRIM47Q96LD4 638 aa21.29■■□□□ 1
DDX41-217ENST00000515562 AS3MTQ9HBK9 375 aa21.29■■□□□ 1
DDX41-217ENST00000515562 PNMA3Q9UL41 463 aa21.29■■□□□ 1
DDX41-217ENST00000515562 NDUFB9Q9Y6M9 179 aa21.29■■□□□ 1
DDX41-217ENST00000515562 USP17L5A8MUK1 530 aa21.28■■□□□ 1
DDX41-217ENST00000515562 RAB11FIP3O75154 756 aa21.28■■□□□ 1
DDX41-217ENST00000515562 FMNL1O95466 1100 aaPredicted RBP21.28■■□□□ 1
DDX41-217ENST00000515562 IFIT2P09913 472 aaKnown RBP21.28■■□□□ 1
DDX41-217ENST00000515562 FCGRTP55899 365 aa21.28■■□□□ 1
DDX41-217ENST00000515562 PDE3AQ14432 1141 aa21.28■■□□□ 1
DDX41-217ENST00000515562 FOXP4Q8IVH2 680 aaPredicted RBP21.28■■□□□ 1
DDX41-217ENST00000515562 SIRT2Q8IXJ6 389 aa21.28■■□□□ 1
DDX41-217ENST00000515562 CRACR2BQ8N4Y2 399 aaPredicted RBP21.28■■□□□ 1
DDX41-217ENST00000515562 TMEM106CQ9BVX2 250 aa21.28■■□□□ 1
DDX41-217ENST00000515562 ANTXR1Q9H6X2 564 aa21.28■■□□□ 1
DDX41-217ENST00000515562 SRRDQ9UH36 339 aa21.28■■□□□ 1
DDX41-217ENST00000515562 APBB1O00213 710 aa21.27■■□□□ 1
DDX41-217ENST00000515562 ASNSP08243 561 aa21.27■■□□□ 1
DDX41-217ENST00000515562 OSBPP22059 807 aa21.27■■□□□ 1
DDX41-217ENST00000515562 CTGFP29279 349 aa21.27■■□□□ 1
DDX41-217ENST00000515562 SPP2Q13103 211 aa21.27■■□□□ 1
DDX41-217ENST00000515562 MIGA1Q8NAN2 632 aa21.27■■□□□ 1
DDX41-217ENST00000515562 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.27■■□□□ 1
DDX41-217ENST00000515562 GINM1Q9NU53 330 aa21.27■■□□□ 1
DDX41-217ENST00000515562 PALD1Q9ULE6 856 aa21.27■■□□□ 1
DDX41-217ENST00000515562 MGAMO43451 1857 aa21.26■□□□□ 0.99
DDX41-217ENST00000515562 DYNLL1P63167 89 aaKnown RBP21.26■□□□□ 0.99
DDX41-217ENST00000515562 PABPC4Q13310 644 aaKnown RBP eCLIP21.26■□□□□ 0.99
DDX41-217ENST00000515562 RRP1BQ14684 758 aaKnown RBP21.26■□□□□ 0.99
DDX41-217ENST00000515562 PRPF38BQ5VTL8 546 aaKnown RBP21.26■□□□□ 0.99
DDX41-217ENST00000515562 DNAJC18Q9H819 358 aa21.26■□□□□ 0.99
DDX41-217ENST00000515562 MYPNQ86TC9 1320 aa21.26■□□□□ 0.99
DDX41-217ENST00000515562 MYH1P12882 1939 aa21.25■□□□□ 0.99
DDX41-217ENST00000515562 ECM2O94769 699 aaPredicted RBP21.25■□□□□ 0.99
DDX41-217ENST00000515562 USP5P45974 858 aa21.25■□□□□ 0.99
DDX41-217ENST00000515562 HMGCS2P54868 508 aa21.25■□□□□ 0.99
DDX41-217ENST00000515562 TREML2Q5T2D2 321 aa21.25■□□□□ 0.99
DDX41-217ENST00000515562 RAET1EQ8TD07 263 aa21.25■□□□□ 0.99
DDX41-217ENST00000515562 SH3TC2Q8TF17 1288 aa21.25■□□□□ 0.99
DDX41-217ENST00000515562 SAP30BPQ9UHR5 308 aaKnown RBP21.25■□□□□ 0.99
DDX41-217ENST00000515562 BRCA2P51587 3418 aa21.25■□□□□ 0.99
DDX41-217ENST00000515562 KIAA0100Q14667 2235 aaKnown RBP21.24■□□□□ 0.99
DDX41-217ENST00000515562 SLC4A8Q2Y0W8 1093 aa21.24■□□□□ 0.99
DDX41-217ENST00000515562 SH3D19Q5HYK7 790 aa21.24■□□□□ 0.99
DDX41-217ENST00000515562 WDR18Q9BV38 432 aa21.24■□□□□ 0.99
DDX41-217ENST00000515562 DDX60LQ5H9U9 1706 aaKnown RBP21.24■□□□□ 0.99
DDX41-217ENST00000515562 EHD4Q9H223 541 aa21.23■□□□□ 0.99
DDX41-217ENST00000515562 PRKCZQ05513 592 aa21.22■□□□□ 0.99
DDX41-217ENST00000515562 MTMR2Q13614 643 aa21.22■□□□□ 0.99
DDX41-217ENST00000515562 FAM110CQ1W6H9 321 aa21.22■□□□□ 0.99
DDX41-217ENST00000515562 SLC9C2Q5TAH2 1124 aa21.22■□□□□ 0.99
DDX41-217ENST00000515562 C20orf194Q5TEA3 1177 aa21.22■□□□□ 0.99
DDX41-217ENST00000515562 DNAJC2Q99543 621 aaKnown RBP21.22■□□□□ 0.99
DDX41-217ENST00000515562 ZBTB21Q9ULJ3 1066 aa21.22■□□□□ 0.99
DDX41-217ENST00000515562 NAV1Q8NEY1 1877 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms