RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	RSRP1	Q9BUV0	290 aa		7.39	□□□□□ -1.23
MATR3-223	ENST00000514402	KRTAP9-2	Q9BYQ4	174 aa		7.39	□□□□□ -1.23
MATR3-223	ENST00000514402	WNT10A	Q9GZT5	417 aa		7.39	□□□□□ -1.23
MATR3-223	ENST00000514402	CSAD	Q9Y600	493 aa		7.39	□□□□□ -1.23
MATR3-223	ENST00000514402	LRIG2	O94898	1065 aa		7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	TFE3	P19532	575 aa	Predicted RBP	7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	GP2	P55259	537 aa	Known RBP	7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	INPP5A	Q14642	412 aa		7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	TSNAXIP1	Q2TAA8	658 aa		7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	WIPI1	Q5MNZ9	446 aa	Predicted RBP	7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	PHC3	Q8NDX5	983 aa		7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	GIPC2	Q8TF65	315 aa		7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	MISP3	Q96FF7	219 aa		7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	ANGEL1	Q9UNK9	670 aa	Known RBP	7.38	□□□□□ -1.23
MATR3-223	ENST00000514402	PRAMEF27	A3QJZ7	478 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	RPL6	Q02878	288 aa	Known RBP	7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	SEPT6	Q14141	434 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	MRPL58	Q14197	206 aa	Known RBP	7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	MAP3K11	Q16584	847 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	STK11IP	Q8N1F8	1099 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	FBXL18	Q96ME1	805 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	LRRC4C	Q9HCJ2	640 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	PRDM10	Q9NQV6	1147 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	CCDC39	Q9UFE4	941 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	ZC3H7B	Q9UGR2	993 aa	Known RBP	7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	GTF2IRD1	Q9UHL9	959 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	PCDHB5	Q9Y5E4	795 aa		7.37	□□□□□ -1.23
MATR3-223	ENST00000514402	KRTAP9-6	A0A140TA67	174 aa		7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	IGF2BP3	O00425	579 aa	Known RBP eCLIP	7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	GFRA2	O00451	464 aa		7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	LMNB2	Q03252	620 aa		7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	RELL1	Q8IUW5	271 aa		7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	HID1	Q8IV36	788 aa		7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	TOP6BL	Q8N6T0	577 aa		7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	MFSD2A	Q8NA29	543 aa		7.36	□□□□□ -1.23
MATR3-223	ENST00000514402	MFAP1	P55081	439 aa	Known RBP	7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	ETF1	P62495	437 aa	Known RBP	7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	PDE4B	Q07343	736 aa		7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	ARMCX6	Q7L4S7	300 aa		7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	NETO1	Q8TDF5	533 aa		7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	RHOV	Q96L33	236 aa		7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	TMEM74	Q96NL1	305 aa		7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	FOXQ1	Q9C009	403 aa		7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	TLR6	Q9Y2C9	796 aa		7.35	□□□□□ -1.23
MATR3-223	ENST00000514402	LEFTY1	O75610	366 aa		7.34	□□□□□ -1.23
MATR3-223	ENST00000514402	ZNF746	Q6NUN9	644 aa	Predicted RBP	7.34	□□□□□ -1.23
MATR3-223	ENST00000514402	AGBL5	Q8NDL9	886 aa		7.34	□□□□□ -1.23
MATR3-223	ENST00000514402	ADAM30	Q9UKF2	790 aa		7.34	□□□□□ -1.23
MATR3-223	ENST00000514402	ADAMTS4	O75173	837 aa		7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	CEACAM5	P06731	702 aa		7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	CAMK2G	Q13555	558 aa	Predicted RBP	7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	SLBP	Q14493	270 aa	Known RBP eCLIP	7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	IFI16	Q16666	785 aa	Known RBP	7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	ARHGAP27	Q6ZUM4	889 aa		7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	ERMP1	Q7Z2K6	904 aa		7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	UBE3D	Q7Z6J8	389 aa		7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	GATAD2B	Q8WXI9	593 aa		7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	COX4I2	Q96KJ9	171 aa		7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	MAPK8IP1	Q9UQF2	711 aa		7.33	□□□□□ -1.24
MATR3-223	ENST00000514402	CILP	O75339	1184 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	BPNT1	O95861	308 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	ZNF16	P17020	682 aa	Predicted RBP	7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	GRK4	P32298	578 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	OXCT1	P55809	520 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	C22orf34	Q6ZV56	151 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	FAM214B	Q7L5A3	538 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	KRTAP1-3	Q8IUG1	177 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	MRPL41	Q8IXM3	137 aa	Known RBP	7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	FBRS	Q9HAH7	460 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	VAV3	Q9UKW4	847 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	SLC5A6	Q9Y289	635 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	SNX11	Q9Y5W9	270 aa		7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	OAS3	Q9Y6K5	1087 aa	Known RBP	7.32	□□□□□ -1.24
MATR3-223	ENST00000514402	TMEM265	A0A087WTH1	108 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	FAM221A	A4D161	298 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	CST3	P01034	146 aa	Predicted RBP	7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	PF4	P02776	101 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	GBP2	P32456	591 aa	Predicted RBP	7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	CDK8	P49336	464 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	PRKCQ	Q04759	706 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	SLC6A19	Q695T7	634 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	TNKS2	Q9H2K2	1166 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	PRDM5	Q9NQX1	630 aa	Predicted RBP	7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	KCNQ5	Q9NR82	932 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	ROBO2	Q9HCK4	1378 aa		7.31	□□□□□ -1.24
MATR3-223	ENST00000514402	RBM47	A0AV96	593 aa	Known RBP	7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	EOMES	O95936	686 aa		7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	PGR	P06401	933 aa		7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	IRAK1	P51617	712 aa		7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	MPP2	Q14168	576 aa		7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	HS2ST1	Q7LGA3	356 aa		7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	PLD6	Q8N2A8	252 aa	Known RBP	7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	FLCN	Q8NFG4	579 aa		7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	BCL7C	Q8WUZ0	217 aa	Predicted RBP	7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	JARID2	Q92833	1246 aa	Predicted RBP	7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	HEXIM2	Q96MH2	286 aa	Known RBP	7.3	□□□□□ -1.24
MATR3-223	ENST00000514402	PRR36	Q9H6K5	1346 aa		7.29	□□□□□ -1.24
MATR3-223	ENST00000514402	SLITRK5	O94991	958 aa		7.29	□□□□□ -1.24
MATR3-223	ENST00000514402	NKG7	Q16617	165 aa		7.29	□□□□□ -1.24

Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms