RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 USP44Q9H0E7 712 aa13.66□□□□□ -0.22
DDX41-216ENST00000513562 OSBPL5Q9H0X9 879 aaPredicted RBP13.66□□□□□ -0.22
DDX41-216ENST00000513562 ASCC2Q9H1I8 757 aaPredicted RBP13.66□□□□□ -0.22
DDX41-216ENST00000513562 MORF4L1Q9UBU8 362 aa13.66□□□□□ -0.22
DDX41-216ENST00000513562 DOCK1Q14185 1865 aa13.65□□□□□ -0.22
DDX41-216ENST00000513562 XRCC5P13010 732 aaKnown RBP13.65□□□□□ -0.22
DDX41-216ENST00000513562 BTDP43251 543 aa13.65□□□□□ -0.22
DDX41-216ENST00000513562 PHKA1P46020 1223 aa13.65□□□□□ -0.22
DDX41-216ENST00000513562 HMGCS2P54868 508 aa13.65□□□□□ -0.22
DDX41-216ENST00000513562 SPP2Q13103 211 aa13.65□□□□□ -0.22
DDX41-216ENST00000513562 LRRC26Q2I0M4 334 aa13.65□□□□□ -0.22
DDX41-216ENST00000513562 DZIP1Q86YF9 867 aaKnown RBP13.65□□□□□ -0.22
DDX41-216ENST00000513562 FBXO3Q9UK99 471 aa13.65□□□□□ -0.22
DDX41-216ENST00000513562 FAM196BA6NMK8 535 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 NPM3O75607 178 aaKnown RBP13.64□□□□□ -0.23
DDX41-216ENST00000513562 CIAO1O76071 339 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 CYP2B6P20813 491 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 RHBDL3P58872 404 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 MDM2Q00987 491 aaPredicted RBP13.64□□□□□ -0.23
DDX41-216ENST00000513562 SH3D19Q5HYK7 790 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 SLF2Q8IX21 1173 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 SOCS4Q8WXH5 440 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 PTPRFP10586 1907 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 PHIPQ8WWQ0 1821 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 MROH7-TTC4A0A0A0MT08 1334 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 PTPRCP08575 1304 aa13.64□□□□□ -0.23
DDX41-216ENST00000513562 PDS5AQ29RF7 1337 aaKnown RBP13.64□□□□□ -0.23
DDX41-216ENST00000513562 LOC285556D6RIA3 1793 aa13.63□□□□□ -0.23
DDX41-216ENST00000513562 LHX8Q68G74 356 aa13.63□□□□□ -0.23
DDX41-216ENST00000513562 TRMT44Q8IYL2 757 aaKnown RBP13.63□□□□□ -0.23
DDX41-216ENST00000513562 NUDT12Q9BQG2 462 aa13.63□□□□□ -0.23
DDX41-216ENST00000513562 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.63□□□□□ -0.23
DDX41-216ENST00000513562 CEP126Q9P2H0 1117 aa13.63□□□□□ -0.23
DDX41-216ENST00000513562 GPR75-ASB3A0A0A6YYF3 556 aa13.62□□□□□ -0.23
DDX41-216ENST00000513562 ZKSCAN1P17029 563 aaPredicted RBP13.62□□□□□ -0.23
DDX41-216ENST00000513562 CAP2P40123 477 aa13.62□□□□□ -0.23
DDX41-216ENST00000513562 CACNB2Q08289 660 aaPredicted RBP13.62□□□□□ -0.23
DDX41-216ENST00000513562 RASGRF1Q13972 1273 aa13.62□□□□□ -0.23
DDX41-216ENST00000513562 RRP1BQ14684 758 aaKnown RBP13.62□□□□□ -0.23
DDX41-216ENST00000513562 CCDC102BQ68D86 513 aa13.62□□□□□ -0.23
DDX41-216ENST00000513562 MRPL50Q8N5N7 158 aaKnown RBP13.62□□□□□ -0.23
DDX41-216ENST00000513562 SIL1Q9H173 461 aa13.62□□□□□ -0.23
DDX41-216ENST00000513562 USP17L5A8MUK1 530 aa13.61□□□□□ -0.23
DDX41-216ENST00000513562 ADORA1P30542 326 aa13.61□□□□□ -0.23
DDX41-216ENST00000513562 GPRC5AQ8NFJ5 357 aa13.61□□□□□ -0.23
DDX41-216ENST00000513562 USP6NLQ92738 828 aa13.61□□□□□ -0.23
DDX41-216ENST00000513562 FAM161BQ96MY7 647 aa13.61□□□□□ -0.23
DDX41-216ENST00000513562 TXNRD2Q9NNW7 524 aa13.61□□□□□ -0.23
DDX41-216ENST00000513562 ABCF2Q9UG63 623 aa13.61□□□□□ -0.23
DDX41-216ENST00000513562 CDH23Q9H251 3354 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 MAP4K4O95819 1239 aaPredicted RBP13.6□□□□□ -0.23
DDX41-216ENST00000513562 CCND3P30281 292 aaPredicted RBP13.6□□□□□ -0.23
DDX41-216ENST00000513562 MAPK4P31152 587 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 HOXA7P31268 230 aaPredicted RBP13.6□□□□□ -0.23
DDX41-216ENST00000513562 IL15P40933 162 aaPredicted RBP13.6□□□□□ -0.23
DDX41-216ENST00000513562 IRX3P78415 501 aaPredicted RBP13.6□□□□□ -0.23
DDX41-216ENST00000513562 MECOMQ03112 1051 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 PDE3AQ14432 1141 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 ZNF697Q5TEC3 545 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 SPTY2D1Q68D10 685 aaPredicted RBP13.6□□□□□ -0.23
DDX41-216ENST00000513562 ZNF384Q8TF68 577 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 WDR18Q9BV38 432 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 AS3MTQ9HBK9 375 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 MYH13Q9UKX3 1938 aa13.6□□□□□ -0.23
DDX41-216ENST00000513562 MUC3AQ02505 3323 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 AK9Q5TCS8 1911 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 PEX10O60683 326 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 RGS2P41220 211 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 BACE1P56817 501 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 HERVK_113P62684 666 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 MTMR2Q13614 643 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 CCL14Q16627 93 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 MORN1Q5T089 497 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 P2RX7Q99572 595 aaKnown RBP13.59□□□□□ -0.23
DDX41-216ENST00000513562 APBA2Q99767 749 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 LBHD1Q9BQE6 289 aaPredicted RBP13.59□□□□□ -0.23
DDX41-216ENST00000513562 MRS2Q9HD23 443 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 PRDM6Q9NQX0 595 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 HERC5Q9UII4 1024 aaKnown RBP13.59□□□□□ -0.23
DDX41-216ENST00000513562 PLXNB2O15031 1838 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 PRUNE2Q8WUY3 3088 aa13.59□□□□□ -0.23
DDX41-216ENST00000513562 DNAH12Q6ZR08 3092 aa13.58□□□□□ -0.23
DDX41-216ENST00000513562 ERICH6Q7L0X2 663 aa13.58□□□□□ -0.24
DDX41-216ENST00000513562 GPR142Q7Z601 462 aa13.58□□□□□ -0.24
DDX41-216ENST00000513562 CDX2Q99626 313 aaPredicted RBP13.58□□□□□ -0.24
DDX41-216ENST00000513562 PORCNQ9H237 461 aa13.58□□□□□ -0.24
DDX41-216ENST00000513562 TMOD4Q9NZQ9 345 aa13.58□□□□□ -0.24
DDX41-216ENST00000513562 RBPJLQ9UBG7 517 aa13.58□□□□□ -0.24
DDX41-216ENST00000513562 ERVK-9P63128 1117 aa13.57□□□□□ -0.24
DDX41-216ENST00000513562 ERVK-24P63145 666 aa13.57□□□□□ -0.24
DDX41-216ENST00000513562 PLEKHH3Q7Z736 793 aa13.57□□□□□ -0.24
DDX41-216ENST00000513562 MAFAQ8NHW3 353 aaPredicted RBP13.57□□□□□ -0.24
DDX41-216ENST00000513562 GTF3C2Q8WUA4 911 aaPredicted RBP13.57□□□□□ -0.24
DDX41-216ENST00000513562 ASNSP08243 561 aa13.56□□□□□ -0.24
DDX41-216ENST00000513562 GSTO1P78417 241 aa13.56□□□□□ -0.24
DDX41-216ENST00000513562 Q3C1V9 767 aa13.56□□□□□ -0.24
DDX41-216ENST00000513562 POTEEQ6S8J3 1075 aa13.56□□□□□ -0.24
DDX41-216ENST00000513562 SSH1Q8WYL5 1049 aa13.56□□□□□ -0.24
DDX41-216ENST00000513562 NSUN4Q96CB9 384 aaKnown RBP13.56□□□□□ -0.24
DDX41-216ENST00000513562 SENP6Q9GZR1 1112 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms