RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ZCCHC17Q9NP64 241 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 ARGLU1Q9NWB6 273 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 PATL2C9JE40 543 aaKnown RBP10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 STARD3NLO95772 234 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 CASQ1P31415 396 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 RTN1Q16799 776 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 CADPS2Q86UW7 1296 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 SGMS1Q86VZ5 419 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 TRIM22Q8IYM9 498 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 MED15Q96RN5 788 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 SEC31BQ9NQW1 1179 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 KAT6BQ8WYB5 2073 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 FAM205CA6NFA0 338 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 SMIM22K7EJ46 135 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 COBLO75128 1261 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 MDM2Q00987 491 aaPredicted RBP10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 TC2NQ8N9U0 490 aa10.6□□□□□ -0.71
LIMCH1-215ENST00000512632 FAM237AA0A1B0GTK4 181 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 IFNAR1P17181 557 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 PTPREP23469 700 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 AKNAD1Q5T1N1 836 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 SPECC1LQ69YQ0 1117 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 DHX58Q96C10 678 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 PLA2G12BQ9BX93 195 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 HOOK1Q9UJC3 728 aaKnown RBP10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 FBXO2Q9UK22 296 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 TRPM3Q9HCF6 1732 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 MAP3K15Q6ZN16 1313 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 MST1RQ04912 1400 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 RIC1Q4ADV7 1423 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 TCRBV5S4A2TA0A5A2 114 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 MINDY4BA8MYZ0 360 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 MMP1P03956 469 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 WTAPQ15007 396 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 STAMQ92783 540 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 NWD2Q9ULI1 1742 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 TEX33O43247 280 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 FMNL1O95466 1100 aaPredicted RBP10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 TUBB4AP04350 444 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 CREBRFQ8IUR6 639 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 VGLL2Q8N8G2 317 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 SPATA5Q8NB90 893 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 LZTFL1Q9NQ48 299 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 SLC4A4Q9Y6R1 1079 aa10.59□□□□□ -0.71
LIMCH1-215ENST00000512632 GSG1L2A8MUP6 293 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 LIFRP42702 1097 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 MAP3K12Q12852 859 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 RASGRF1Q13972 1273 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 NKX1-1Q15270 411 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 CSRNP2Q9H175 543 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 SMYD4Q8IYR2 804 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 LCORLQ8N3X6 602 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 TRERF1Q96PN7 1200 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 ZBTB1Q9Y2K1 713 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 A0A0U1RQJ8 604 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 ATRIPQ8WXE1 791 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 CCDC34Q96HJ3 373 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 ERICH2A1L162 156 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 UQCRFS1P1P0C7P4 283 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 TNS3Q68CZ2 1445 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 MLKLQ8NB16 471 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 CCDC12Q8WUD4 166 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 EPSTI1Q96J88 318 aa10.58□□□□□ -0.72
LIMCH1-215ENST00000512632 MYH15Q9Y2K3 1946 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 EFCAB8A8MWE9 144 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 ZRANB2O95218 330 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 TBX2Q13207 712 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 RILPL1Q5EBL4 403 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 WASF1Q92558 559 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 MPHOSPH8Q99549 860 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 SOWAHDA6NJG2 315 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 ZBTB22O15209 634 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 STX10O60499 249 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 PRDM1O75626 825 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 BCAMP50895 628 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 PPP2R3AQ06190 1150 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 NUTM2AQ8IVF1 878 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 CRACR2BQ8N4Y2 399 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 ENOX1Q8TC92 643 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 LPIN2Q92539 896 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 SRRTQ9BXP5 876 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 MRPL44Q9H9J2 332 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 VPS54Q9P1Q0 977 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 ZNF18P17022 549 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 SART3Q15020 963 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 PUM3Q15397 648 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 RAI14Q9P0K7 980 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 MORC3Q14149 939 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 FANCBQ8NB91 859 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 SDR42E1Q8WUS8 393 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 LRP2BPQ9P2M1 347 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 ABCF2Q9UG63 623 aa10.57□□□□□ -0.72
LIMCH1-215ENST00000512632 PDE8AO60658 829 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 SASH3O75995 380 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 MAP3K9P80192 1104 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 KRT23Q9C075 422 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 ABCC12Q96J65 1359 aa10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 A0A0U1RQG5 324 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 ARID4AP29374 1257 aaPredicted RBP10.56□□□□□ -0.72
LIMCH1-215ENST00000512632 EARS2Q5JPH6 523 aaKnown RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms