RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 LARP6Q9BRS8 491 aaKnown RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 MRPS26Q9BYN8 205 aaKnown RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 PFDN4Q9NQP4 134 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 FOXD4L1Q9NU39 408 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 TBX22Q9Y458 520 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 GPATCH8Q9UKJ3 1502 aaKnown RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 PABPN1LA6NDY0 278 aaKnown RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 GNG11P61952 73 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 VPS72Q15906 364 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 CCDC144BQ3MJ40 725 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 CCDC178Q5BJE1 867 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 SPATA1Q5VX52 437 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 DUSP27Q5VZP5 1158 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 STX12Q86Y82 276 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 CTAGE3PQ8IX95 158 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 RPGRQ92834 1020 aaKnown RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 QKIQ96PU8 341 aaKnown RBP eCLIP3.99□□□□□ -1.77
USP53-205ENST00000509769 FAM129AQ9BZQ8 928 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 UBAP1Q9NZ09 502 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 ZNF777Q9ULD5 760 aaPredicted RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 HYOU1Q9Y4L1 999 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 TRPM2O94759 1503 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 SPDYE4A6NLX3 237 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 LRRIQ3A6PVS8 624 aaPredicted RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 TMCC1O94876 653 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 DDX58O95786 925 aaKnown RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 MMEP08473 750 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 ZSCAN25Q6NSZ9 544 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 SRGAP1Q7Z6B7 1085 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 VPS52Q8N1B4 723 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 MPNDQ8N594 471 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 CCDC51Q96ER9 411 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 SIN3AQ96ST3 1273 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 RAB34Q9BZG1 259 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 KLHL14Q9P2G3 628 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 RBM27Q9P2N5 1060 aaKnown RBP3.99□□□□□ -1.77
USP53-205ENST00000509769 RIPOR2Q9Y4F9 1068 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 ERVK-7P63135 1459 aa3.99□□□□□ -1.77
USP53-205ENST00000509769 TXNDC9O14530 226 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 RIOK3O14730 519 aaKnown RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 ADCY3O60266 1144 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 S100A9P06702 114 aaKnown RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 ST13P50502 369 aaKnown RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 MLLT1Q03111 559 aaPredicted RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 SLC44A4Q53GD3 710 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 KRT80Q6KB66 452 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 TRERF1Q96PN7 1200 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 TBC1D23Q9NUY8 699 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 MRGBPQ9NV56 204 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 SLC52A1Q9NWF4 448 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 SYBUQ9NX95 663 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 C6orf203Q9P0P8 240 aaPredicted RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 WBP11Q9Y2W2 641 aaKnown RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 RWDD3Q9Y3V2 267 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 CAPN7Q9Y6W3 813 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 NPHP3Q7Z494 1330 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 PLEKHG1Q9ULL1 1385 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 VPS8Q8N3P4 1428 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 SIGLEC1Q9BZZ2 1709 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 TMEM191CA6NGB0 347 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 EFCAB8A8MWE9 144 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 CYTH3O43739 400 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 FMNL1O95466 1100 aaPredicted RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 GSTA2P09210 222 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 TMEM191BP0C7N4 346 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 GCFC2P16383 781 aaKnown RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 ECE1P42892 770 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 TMED10P49755 219 aaKnown RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 RAB15P59190 212 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 TUBA1BP68363 451 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 CYLC2Q14093 348 aaPredicted RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 INF2Q27J81 1249 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 VWA3BQ502W6 1294 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 TUBA1AQ71U36 451 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 VSIG1Q86XK7 387 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 CNGA4Q8IV77 575 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 SEPT12Q8IYM1 358 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 KCTD17Q8N5Z5 321 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 N4BP2L2Q92802 583 aaPredicted RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 HPS1Q92902 700 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 RILPL2Q969X0 211 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 HOOK2Q96ED9 719 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 TRIM55Q9BYV6 548 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 SUFUQ9UMX1 484 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 ARIH1Q9Y4X5 557 aaPredicted RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 TTC21AQ8NDW8 1320 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 MAP3K5Q99683 1374 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 PRR23AA6NEV1 266 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 H7C0S8 307 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 EXOC5O00471 708 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 MAP3K7O43318 606 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 E2F6O75461 281 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 PDE1BQ01064 536 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 NFXL1Q6ZNB6 911 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 BRAPQ7Z569 592 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 CASP10Q92851 521 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 ARHGEF2Q92974 986 aaKnown RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 CCDC138Q96M89 665 aa3.98□□□□□ -1.77
USP53-205ENST00000509769 PACSIN2Q9UNF0 486 aaPredicted RBP3.98□□□□□ -1.77
USP53-205ENST00000509769 EFCAB6Q5THR3 1501 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms