RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 KIAA1211Q6ZU35 1233 aa35.33■■■■□ 3.25
LIMCH1-211ENST00000509638 CRACR2BQ8N4Y2 399 aaPredicted RBP35.33■■■■□ 3.25
LIMCH1-211ENST00000509638 EHD4Q9H223 541 aa35.33■■■■□ 3.25
LIMCH1-211ENST00000509638 SERPINB13Q9UIV8 391 aa35.33■■■■□ 3.25
LIMCH1-211ENST00000509638 MINDY4BA8MYZ0 360 aa35.32■■■■□ 3.24
LIMCH1-211ENST00000509638 SMIM22K7EJ46 135 aa35.32■■■■□ 3.24
LIMCH1-211ENST00000509638 TTLL12Q14166 644 aaPredicted RBP35.32■■■■□ 3.24
LIMCH1-211ENST00000509638 GBA2Q9HCG7 927 aaPredicted RBP35.32■■■■□ 3.24
LIMCH1-211ENST00000509638 PPP1R12BO60237 982 aaPredicted RBP35.31■■■■□ 3.24
LIMCH1-211ENST00000509638 TRIM34Q9BYJ4 488 aa35.31■■■■□ 3.24
LIMCH1-211ENST00000509638 DNAJC18Q9H819 358 aa35.31■■■■□ 3.24
LIMCH1-211ENST00000509638 HERC5Q9UII4 1024 aaKnown RBP35.31■■■■□ 3.24
LIMCH1-211ENST00000509638 ROBO3Q96MS0 1386 aa35.31■■■■□ 3.24
LIMCH1-211ENST00000509638 LSG1Q9H089 658 aaKnown RBP35.3■■■■□ 3.24
LIMCH1-211ENST00000509638 ATAD5Q96QE3 1844 aa35.3■■■■□ 3.24
LIMCH1-211ENST00000509638 XPO5Q9HAV4 1204 aaKnown RBP eCLIP35.3■■■■□ 3.24
LIMCH1-211ENST00000509638 MOB2Q70IA6 237 aa35.29■■■■□ 3.24
LIMCH1-211ENST00000509638 METTL16Q86W50 562 aaKnown RBP35.29■■■■□ 3.24
LIMCH1-211ENST00000509638 ZNF341Q9BYN7 854 aa35.29■■■■□ 3.24
LIMCH1-211ENST00000509638 ANGEL1Q9UNK9 670 aaKnown RBP35.29■■■■□ 3.24
LIMCH1-211ENST00000509638 TBC1D12O60347 775 aa35.28■■■■□ 3.24
LIMCH1-211ENST00000509638 PPARAQ07869 468 aa35.28■■■■□ 3.24
LIMCH1-211ENST00000509638 FOXP4Q8IVH2 680 aaPredicted RBP35.28■■■■□ 3.24
LIMCH1-211ENST00000509638 DYNLL2Q96FJ2 89 aa35.28■■■■□ 3.24
LIMCH1-211ENST00000509638 DOCK1Q14185 1865 aa35.27■■■■□ 3.24
LIMCH1-211ENST00000509638 FKBP1BP68106 108 aa35.27■■■■□ 3.24
LIMCH1-211ENST00000509638 MAP3K10Q02779 954 aa35.27■■■■□ 3.24
LIMCH1-211ENST00000509638 C2orf69Q8N8R5 385 aa35.27■■■■□ 3.24
LIMCH1-211ENST00000509638 USP2O75604 605 aaPredicted RBP35.26■■■■□ 3.24
LIMCH1-211ENST00000509638 GABPAQ06546 454 aa35.26■■■■□ 3.24
LIMCH1-211ENST00000509638 SLC44A5Q8NCS7 719 aa35.26■■■■□ 3.24
LIMCH1-211ENST00000509638 WRNIP1Q96S55 665 aa35.26■■■■□ 3.24
LIMCH1-211ENST00000509638 TMEM88BA6NKF7 163 aa35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 IREB2P48200 963 aaKnown RBP35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 ARMC9Q7Z3E5 817 aa35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 MAP4K1Q92918 833 aa35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 CTNNA3Q9UI47 895 aa35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 U3KPZ7 1027 aaPredicted RBP35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 APLP1P51693 650 aa35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 HAND2P61296 217 aa35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 STK11IPQ8N1F8 1099 aa35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 RBM8AQ9Y5S9 174 aaKnown RBP35.25■■■■□ 3.23
LIMCH1-211ENST00000509638 REC8O95072 547 aa35.24■■■■□ 3.23
LIMCH1-211ENST00000509638 C8orf34Q49A92 452 aa35.24■■■■□ 3.23
LIMCH1-211ENST00000509638 C16orf86Q6ZW13 317 aa35.24■■■■□ 3.23
LIMCH1-211ENST00000509638 KLRG1Q96E93 195 aa35.24■■■■□ 3.23
LIMCH1-211ENST00000509638 MAP3K11Q16584 847 aa35.23■■■■□ 3.23
LIMCH1-211ENST00000509638 DDX55Q8NHQ9 600 aaKnown RBP eCLIP35.23■■■■□ 3.23
LIMCH1-211ENST00000509638 PHF20L1A8MW92 1017 aa35.22■■■■□ 3.23
LIMCH1-211ENST00000509638 C1QTNF8P60827 252 aa35.22■■■■□ 3.23
LIMCH1-211ENST00000509638 CTDSPL2Q05D32 466 aa35.22■■■■□ 3.23
LIMCH1-211ENST00000509638 SWAP70Q9UH65 585 aa35.22■■■■□ 3.23
LIMCH1-211ENST00000509638 ANAPC4Q9UJX5 808 aa35.22■■■■□ 3.23
LIMCH1-211ENST00000509638 SHMT1P34896 483 aa35.21■■■■□ 3.23
LIMCH1-211ENST00000509638 IMMTQ16891 758 aaKnown RBP35.21■■■■□ 3.23
LIMCH1-211ENST00000509638 ZNF112Q9UJU3 913 aa35.21■■■■□ 3.23
LIMCH1-211ENST00000509638 UBE2Q2LH0YL09 131 aa35.21■■■■□ 3.23
LIMCH1-211ENST00000509638 SLC3A2P08195 630 aaKnown RBP35.21■■■■□ 3.23
LIMCH1-211ENST00000509638 INPP5BP32019 993 aa35.21■■■■□ 3.23
LIMCH1-211ENST00000509638 NBPF3Q9H094 633 aa35.21■■■■□ 3.23
LIMCH1-211ENST00000509638 TAOK2Q9UL54 1235 aa35.21■■■■□ 3.23
LIMCH1-211ENST00000509638 ZNF213O14771 459 aa35.2■■■■□ 3.23
LIMCH1-211ENST00000509638 CDK8P49336 464 aa35.2■■■■□ 3.23
LIMCH1-211ENST00000509638 ABT1Q9ULW3 272 aaKnown RBP35.2■■■■□ 3.23
LIMCH1-211ENST00000509638 HUNKP57058 714 aa35.19■■■■□ 3.22
LIMCH1-211ENST00000509638 TATDN1Q6P1N9 297 aa35.19■■■■□ 3.22
LIMCH1-211ENST00000509638 SAPCD2Q86UD0 394 aa35.19■■■■□ 3.22
LIMCH1-211ENST00000509638 TBC1D10CQ8IV04 446 aa35.19■■■■□ 3.22
LIMCH1-211ENST00000509638 VGLL4Q14135 290 aa35.18■■■■□ 3.22
LIMCH1-211ENST00000509638 ZKSCAN4Q969J2 545 aaPredicted RBP35.18■■■■□ 3.22
LIMCH1-211ENST00000509638 CREBZFQ9NS37 354 aa35.18■■■■□ 3.22
LIMCH1-211ENST00000509638 TLL2Q9Y6L7 1015 aa35.18■■■■□ 3.22
LIMCH1-211ENST00000509638 RRP1BQ14684 758 aaKnown RBP35.17■■■■□ 3.22
LIMCH1-211ENST00000509638 LDLRAD1Q5T700 205 aa35.17■■■■□ 3.22
LIMCH1-211ENST00000509638 PPP1R3FQ6ZSY5 799 aaPredicted RBP35.17■■■■□ 3.22
LIMCH1-211ENST00000509638 ANKRD13AQ8IZ07 590 aa35.17■■■■□ 3.22
LIMCH1-211ENST00000509638 MAP3K9P80192 1104 aa35.17■■■■□ 3.22
LIMCH1-211ENST00000509638 PDE4BQ07343 736 aa35.17■■■■□ 3.22
LIMCH1-211ENST00000509638 CLMNQ96JQ2 1002 aa35.17■■■■□ 3.22
LIMCH1-211ENST00000509638 CSADQ9Y600 493 aa35.17■■■■□ 3.22
LIMCH1-211ENST00000509638 PRDM1O75626 825 aa35.16■■■■□ 3.22
LIMCH1-211ENST00000509638 GDF11O95390 407 aa35.16■■■■□ 3.22
LIMCH1-211ENST00000509638 CYP21A2P08686 494 aa35.16■■■■□ 3.22
LIMCH1-211ENST00000509638 MKNK2Q9HBH9 465 aa35.16■■■■□ 3.22
LIMCH1-211ENST00000509638 ZNF287Q9HBT7 754 aa35.16■■■■□ 3.22
LIMCH1-211ENST00000509638 CERKLQ49MI3 558 aaPredicted RBP35.15■■■■□ 3.22
LIMCH1-211ENST00000509638 DDX52Q9Y2R4 599 aaKnown RBP eCLIP35.15■■■■□ 3.22
LIMCH1-211ENST00000509638 TACC3Q9Y6A5 838 aa35.15■■■■□ 3.22
LIMCH1-211ENST00000509638 CTNND1O60716 968 aaKnown RBP35.14■■■■□ 3.22
LIMCH1-211ENST00000509638 CAP2P40123 477 aa35.14■■■■□ 3.22
LIMCH1-211ENST00000509638 SHROOM1Q2M3G4 852 aaPredicted RBP35.14■■■■□ 3.22
LIMCH1-211ENST00000509638 STAG1Q8WVM7 1258 aa35.14■■■■□ 3.22
LIMCH1-211ENST00000509638 ZBTB4Q9P1Z0 1013 aaPredicted RBP35.14■■■■□ 3.22
LIMCH1-211ENST00000509638 SNCAIPQ9Y6H5 919 aa35.14■■■■□ 3.22
LIMCH1-211ENST00000509638 GREB1LQ9C091 1923 aaPredicted RBP35.14■■■■□ 3.22
LIMCH1-211ENST00000509638 NOL9Q5SY16 702 aaKnown RBP35.13■■■■□ 3.21
LIMCH1-211ENST00000509638 AKNAD1Q5T1N1 836 aa35.13■■■■□ 3.21
LIMCH1-211ENST00000509638 INCENPQ9NQS7 918 aa35.13■■■■□ 3.21
LIMCH1-211ENST00000509638 PHIPQ8WWQ0 1821 aa35.13■■■■□ 3.21
LIMCH1-211ENST00000509638 RASA1P20936 1047 aa35.13■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms