RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 ATRNL1Q5VV63 1379 aa13.7□□□□□ -0.22
LIMCH1-210ENST00000509454 HIP1O00291 1037 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 AOC2O75106 756 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 GSPT1P15170 499 aaKnown RBP13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 GNAT2P19087 354 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 TDO2P48775 406 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 MAP3K11Q16584 847 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 LDLRAD1Q5T700 205 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 ZKSCAN4Q969J2 545 aaPredicted RBP13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 FAM227BQ96M60 508 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 DCP1AQ9NPI6 582 aaPredicted RBP13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 ATP8A2Q9NTI2 1148 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 COL2A1P02458 1487 aaPredicted RBP13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 A0A0D9SFI3 127 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 INPP5BP32019 993 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 VGLL4Q14135 290 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 MCMDC2Q4G0Z9 681 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 CWC27Q6UX04 472 aaKnown RBP13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 RASAL3Q86YV0 1011 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 DNAJC5GQ8N7S2 189 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 NACAP1Q9BZK3 213 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 HELLSQ9NRZ9 838 aa13.69□□□□□ -0.22
LIMCH1-210ENST00000509454 SLC10A3P09131 477 aa13.68□□□□□ -0.22
LIMCH1-210ENST00000509454 CYP2D6P10635 497 aa13.68□□□□□ -0.22
LIMCH1-210ENST00000509454 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.68□□□□□ -0.22
LIMCH1-210ENST00000509454 FOXP4Q8IVH2 680 aaPredicted RBP13.68□□□□□ -0.22
LIMCH1-210ENST00000509454 PICK1Q9NRD5 415 aa13.68□□□□□ -0.22
LIMCH1-210ENST00000509454 HERC5Q9UII4 1024 aaKnown RBP13.68□□□□□ -0.22
LIMCH1-210ENST00000509454 OTOFQ9HC10 1997 aa13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 MINDY4BA8MYZ0 360 aa13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 NOGQ13253 232 aa13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 TICAM2Q86XR7 235 aa13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 OPTNQ96CV9 577 aa13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 OTUD5Q96G74 571 aa13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 WNK4Q96J92 1243 aa13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 SERPINB13Q9UIV8 391 aa13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 BAZ2AQ9UIF9 1905 aaKnown RBP13.67□□□□□ -0.22
LIMCH1-210ENST00000509454 CYP2D7A0A087X1C5 515 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 UNCXA6NJT0 531 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 GSG1L2A8MUP6 293 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 PATL2C9JE40 543 aaKnown RBP13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 USP17L12C9JPN9 530 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 USP17L21D6R901 530 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 TBC1D12O60347 775 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 PLCD1P51178 756 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 MFAP1P55081 439 aaKnown RBP13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 STK11IPQ8N1F8 1099 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 NAPBQ9H115 298 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 SNCAIPQ9Y6H5 919 aa13.66□□□□□ -0.22
LIMCH1-210ENST00000509454 FAM155AB1AL88 458 aaPredicted RBP13.65□□□□□ -0.22
LIMCH1-210ENST00000509454 CAPN15O75808 1086 aa13.65□□□□□ -0.22
LIMCH1-210ENST00000509454 KIF23Q02241 960 aaPredicted RBP13.65□□□□□ -0.22
LIMCH1-210ENST00000509454 SPRYD7Q5W111 196 aa13.65□□□□□ -0.22
LIMCH1-210ENST00000509454 SCYL3Q8IZE3 742 aa13.65□□□□□ -0.22
LIMCH1-210ENST00000509454 ARPP21Q9UBL0 812 aaPredicted RBP13.65□□□□□ -0.22
LIMCH1-210ENST00000509454 ZNF112Q9UJU3 913 aa13.65□□□□□ -0.22
LIMCH1-210ENST00000509454 CCDC171Q6TFL3 1326 aa13.65□□□□□ -0.22
LIMCH1-210ENST00000509454 PHF20L1A8MW92 1017 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 CTNND1O60716 968 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 GDF11O95390 407 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 MAP2K2P36507 400 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 EVX2Q03828 476 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 GIMAP6Q6P9H5 292 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 CTR9Q6PD62 1173 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 ZNF589Q86UQ0 364 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 ERO1BQ86YB8 467 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 IFNL3Q8IZI9 196 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 RUFY2Q8WXA3 655 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 DYNLL2Q96FJ2 89 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 ZIC5Q96T25 663 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 BEGAINQ9BUH8 593 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 EHD4Q9H223 541 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 SIPA1L1O43166 1804 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 MPHOSPH10O00566 681 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 MAP3K10Q02779 954 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 NOL9Q5SY16 702 aaKnown RBP13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 C12orf60Q5U649 245 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 VPS53Q5VIR6 699 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 DNAJC18Q9H819 358 aa13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 EPB41L4AQ9HCS5 686 aaPredicted RBP13.64□□□□□ -0.23
LIMCH1-210ENST00000509454 DDX60LQ5H9U9 1706 aaKnown RBP13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 SPDYE5A6NIY4 337 aa13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 MYCNP04198 464 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 ZBTB48P10074 688 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 CHMLP26374 656 aa13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 CAP2P40123 477 aa13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 CERKLQ49MI3 558 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 BMP2KLQ5H9B9 411 aa13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 SLC44A5Q8NCS7 719 aa13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 CABP5Q9NP86 173 aa13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 ZHX2Q9Y6X8 837 aa13.63□□□□□ -0.23
LIMCH1-210ENST00000509454 DOCK1Q14185 1865 aa13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 SLC3A2P08195 630 aaKnown RBP13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 PTPRAP18433 802 aa13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 GJA5P36382 358 aa13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 MAP2K1Q02750 393 aaPredicted RBP13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 SREBF2Q12772 1141 aa13.62□□□□□ -0.23
LIMCH1-210ENST00000509454 PPIL2Q13356 520 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms