RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ALX3O95076 343 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 HTR3BO95264 441 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 TIAF1O95411 115 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 DRD2P14416 443 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 COL8A1P27658 744 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 GRK4P32298 578 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 ETFBP38117 255 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 GIPRP48546 466 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 ETF1P62495 437 aaKnown RBP6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 LRRFIP1Q32MZ4 808 aaKnown RBP6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 PPM1JQ5JR12 505 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 DYMQ7RTS9 669 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 ALYREFQ86V81 257 aaKnown RBP6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 RNF214Q8ND24 703 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 OR6P1Q8NGX9 317 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 SHDQ96IW2 340 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 FANCD2OSQ96PS1 177 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 ZNF408Q9H9D4 720 aa6.26□□□□□ -1.41
HMGB1P28-201ENST00000507778 SART1O43290 800 aaKnown RBP6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 PGRP06401 933 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 ASPAP45381 313 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 ZBTB37Q5TC79 503 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 CKAP2LQ8IYA6 745 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 TMEM151AQ8N4L1 468 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 RBBP8NLQ8NC74 664 aaPredicted RBP6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 ZNF507Q8TCN5 953 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 CEP41Q9BYV8 373 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 REV1Q9UBZ9 1251 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 ADAM30Q9UKF2 790 aa6.25□□□□□ -1.41
HMGB1P28-201ENST00000507778 GLB1P16278 677 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 IREB2P48200 963 aaKnown RBP6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 TTLL4Q14679 1199 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 TMEM201Q5SNT2 666 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 ANKS3Q6ZW76 656 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 CDC37L1Q7L3B6 337 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 C2CD4AQ8NCU7 369 aaPredicted RBP6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 PMFBP1Q8TBY8 1022 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 WFDC12Q8WWY7 111 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 PIDD1Q9HB75 910 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 PRKAG3Q9UGI9 489 aa6.24□□□□□ -1.41
HMGB1P28-201ENST00000507778 RNGTTO60942 597 aaKnown RBP6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 GDF11O95390 407 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 NOS3P29474 1203 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 USP11P51784 963 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 TNNI3KQ59H18 835 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 Q6ZS46 218 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 HID1Q8IV36 788 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 KCT2Q8NC54 265 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 LNPKQ9C0E8 428 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 GSX1Q9H4S2 264 aaPredicted RBP6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 ANTXR1Q9H6X2 564 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 FAM105AQ9NUU6 356 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 GMIPQ9P107 970 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 R3HCC1Q9Y3T6 440 aaKnown RBP6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 ACTL7BQ9Y614 415 aa6.23□□□□□ -1.41
HMGB1P28-201ENST00000507778 SLC22A31A6NKX4 558 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 MEIS3P2A8K0S8 358 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 SMAD7O15105 426 aaKnown RBP6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 GAS2O43903 313 aaKnown RBP6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 HCLS1P14317 486 aaPredicted RBP6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 PREPP48147 710 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 RASSF7Q02833 373 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 ADGRE1Q14246 886 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 NBPF6Q5VWK0 638 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 DPH6Q7L8W6 267 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 LSRQ86X29 649 aaPredicted RBP6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 TMEM40Q8WWA1 233 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 ISL2Q96A47 359 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 NBPF4Q96M43 638 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 TM9SF2Q99805 663 aa6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 SSU72Q9NP77 194 aaKnown RBP6.22□□□□□ -1.41
HMGB1P28-201ENST00000507778 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 CHURC1-FNTBB4DL54 471 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 NEFMP07197 916 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 NTF4P34130 210 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 YARSP54577 528 aaKnown RBP6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 MBTPS1Q14703 1052 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 SLC6A19Q695T7 634 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 MCATQ8IVS2 390 aaKnown RBP6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 SMYD4Q8IYR2 804 aaPredicted RBP6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 FAM169BQ8N8A8 192 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 FAM13CQ8NE31 585 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 ACSF2Q96CM8 615 aaPredicted RBP6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 ATG4CQ96DT6 458 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 TMEM87BQ96K49 555 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 UBL7Q96S82 380 aaPredicted RBP6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 TJP2Q9UDY2 1190 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 KLHL3Q9UH77 587 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 PCOLCE2Q9UKZ9 415 aa6.21□□□□□ -1.42
HMGB1P28-201ENST00000507778 KLF4O43474 513 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 DNAJA2O60884 412 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 RAB33AQ14088 237 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 PPP2R5EQ16537 467 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 CCDC144BQ3MJ40 725 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 CDCP2Q5VXM1 449 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 OVOS1Q6IE37 1185 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 RUFY4Q6ZNE9 571 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 TXNRD3Q86VQ6 643 aa6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.2□□□□□ -1.42
HMGB1P28-201ENST00000507778 MRPL41Q8IXM3 137 aaKnown RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms