RNA–Protein interactions for RNA: ENST00000497448.1

TOM1-217, Transcript of target of myb1 membrane trafficking protein, humanhuman

TSL 2

Gene TOM1, Length 438 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1-217ENST00000497448 ASCC2Q9H1I8 757 aaPredicted RBP13.13□□□□□ -0.31
TOM1-217ENST00000497448 MORF4L1Q9UBU8 362 aa13.13□□□□□ -0.31
TOM1-217ENST00000497448 DDTLA6NHG4 134 aaPredicted RBP13.12□□□□□ -0.31
TOM1-217ENST00000497448 XRCC5P13010 732 aaKnown RBP13.12□□□□□ -0.31
TOM1-217ENST00000497448 PUM3Q15397 648 aaKnown RBP13.12□□□□□ -0.31
TOM1-217ENST00000497448 SHHQ15465 462 aa13.12□□□□□ -0.31
TOM1-217ENST00000497448 C9orf50Q5SZB4 431 aa13.12□□□□□ -0.31
TOM1-217ENST00000497448 ZSCAN29Q8IWY8 852 aaPredicted RBP13.12□□□□□ -0.31
TOM1-217ENST00000497448 MIER1Q8N108 512 aa13.12□□□□□ -0.31
TOM1-217ENST00000497448 USP38Q8NB14 1042 aa13.12□□□□□ -0.31
TOM1-217ENST00000497448 PEX10O60683 326 aa13.11□□□□□ -0.31
TOM1-217ENST00000497448 IFIT1P09914 478 aaKnown RBP13.11□□□□□ -0.31
TOM1-217ENST00000497448 HMGCS2P54868 508 aa13.11□□□□□ -0.31
TOM1-217ENST00000497448 PABPC4Q13310 644 aaKnown RBP eCLIP13.11□□□□□ -0.31
TOM1-217ENST00000497448 CCL14Q16627 93 aa13.11□□□□□ -0.31
TOM1-217ENST00000497448 RABL6Q3YEC7 729 aaPredicted RBP13.11□□□□□ -0.31
TOM1-217ENST00000497448 NUDT12Q9BQG2 462 aa13.11□□□□□ -0.31
TOM1-217ENST00000497448 BICC1Q9H694 974 aaKnown RBP13.11□□□□□ -0.31
TOM1-217ENST00000497448 DDX4Q9NQI0 724 aaKnown RBP13.11□□□□□ -0.31
TOM1-217ENST00000497448 FANCIQ9NVI1 1328 aa13.11□□□□□ -0.31
TOM1-217ENST00000497448 TMEM265A0A087WTH1 108 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 FAM196BA6NMK8 535 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 ALDH1L1O75891 902 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 LDHBP07195 334 aaKnown RBP13.1□□□□□ -0.31
TOM1-217ENST00000497448 ATN1P54259 1190 aaPredicted RBP13.1□□□□□ -0.31
TOM1-217ENST00000497448 SMAD3P84022 425 aaKnown RBP13.1□□□□□ -0.31
TOM1-217ENST00000497448 SPP2Q13103 211 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 TRMT44Q8IYL2 757 aaKnown RBP13.1□□□□□ -0.31
TOM1-217ENST00000497448 ANKRD44Q8N8A2 993 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 KLHDC4Q8TBB5 520 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 FAM122AQ96E09 287 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 SENP6Q9GZR1 1112 aaPredicted RBP13.1□□□□□ -0.31
TOM1-217ENST00000497448 PRKAG2Q9UGJ0 569 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 GAKO14976 1311 aa13.1□□□□□ -0.31
TOM1-217ENST00000497448 SIPA1L1O43166 1804 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 VAMP4O75379 141 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 NBPF7P0C2Y1 421 aaPredicted RBP13.09□□□□□ -0.31
TOM1-217ENST00000497448 RTP1P59025 263 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 PICALMQ13492 652 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 ZNF280CQ8ND82 737 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 USP6NLQ92738 828 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 SRCIN1Q9C0H9 1055 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 TXNRD2Q9NNW7 524 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 UTYO14607 1347 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 SALL1Q9NSC2 1324 aa13.09□□□□□ -0.31
TOM1-217ENST00000497448 SLC5A1P13866 664 aa13.08□□□□□ -0.32
TOM1-217ENST00000497448 PDE3AQ14432 1141 aa13.08□□□□□ -0.32
TOM1-217ENST00000497448 CCDC27Q2M243 656 aa13.08□□□□□ -0.32
TOM1-217ENST00000497448 SH3D19Q5HYK7 790 aa13.08□□□□□ -0.32
TOM1-217ENST00000497448 SLC4A10Q6U841 1118 aa13.08□□□□□ -0.32
TOM1-217ENST00000497448 WWC1Q8IX03 1113 aa13.08□□□□□ -0.32
TOM1-217ENST00000497448 APBA2Q99767 749 aa13.08□□□□□ -0.32
TOM1-217ENST00000497448 IL16Q14005 1332 aa13.08□□□□□ -0.32
TOM1-217ENST00000497448 HOXD11P31277 338 aaPredicted RBP13.07□□□□□ -0.32
TOM1-217ENST00000497448 RGS2P41220 211 aa13.07□□□□□ -0.32
TOM1-217ENST00000497448 IRX3P78415 501 aaPredicted RBP13.07□□□□□ -0.32
TOM1-217ENST00000497448 TBC1D2Q9BYX2 928 aa13.07□□□□□ -0.32
TOM1-217ENST00000497448 OSBPL5Q9H0X9 879 aaPredicted RBP13.07□□□□□ -0.32
TOM1-217ENST00000497448 PORCNQ9H237 461 aa13.07□□□□□ -0.32
TOM1-217ENST00000497448 DNM1LO00429 736 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 TBC1D12O60347 775 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 MAPK4P31152 587 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 HERVK_113P62684 666 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 RRP1BQ14684 758 aaKnown RBP13.06□□□□□ -0.32
TOM1-217ENST00000497448 MORN1Q5T089 497 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 GPR142Q7Z601 462 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 GPRC5AQ8NFJ5 357 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 LPIN2Q92539 896 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 BADQ92934 168 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.06□□□□□ -0.32
TOM1-217ENST00000497448 PRDM5Q9NQX1 630 aaPredicted RBP13.06□□□□□ -0.32
TOM1-217ENST00000497448 ATP11BQ9Y2G3 1177 aa13.06□□□□□ -0.32
TOM1-217ENST00000497448 BTDP43251 543 aa13.05□□□□□ -0.32
TOM1-217ENST00000497448 MTMR2Q13614 643 aa13.05□□□□□ -0.32
TOM1-217ENST00000497448 P2RX7Q99572 595 aaKnown RBP13.05□□□□□ -0.32
TOM1-217ENST00000497448 DDX20Q9UHI6 824 aaKnown RBP13.05□□□□□ -0.32
TOM1-217ENST00000497448 USP17L5A8MUK1 530 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 HOXA7P31268 230 aaPredicted RBP13.04□□□□□ -0.32
TOM1-217ENST00000497448 CAP2P40123 477 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 ERVK-9P63128 1117 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 ERVK-24P63145 666 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 EXOSC9Q06265 439 aaKnown RBP13.04□□□□□ -0.32
TOM1-217ENST00000497448 MAP3K12Q12852 859 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 GRIN2CQ14957 1233 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 Q3C1V9 767 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 DZIP1Q86YF9 867 aaKnown RBP13.04□□□□□ -0.32
TOM1-217ENST00000497448 LPAR1Q92633 364 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 PDLIM7Q9NR12 457 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 FLRT1Q9NZU1 646 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 RBPJLQ9UBG7 517 aa13.04□□□□□ -0.32
TOM1-217ENST00000497448 EYA2O00167 538 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 MSCO60682 206 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 PHKA1P46020 1223 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 RHBDL3P58872 404 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 MAP2K5Q13163 448 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 PLEKHH3Q7Z736 793 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 PAGR1Q9BTK6 254 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 AS3MTQ9HBK9 375 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 DENND2AQ9ULE3 1009 aa13.03□□□□□ -0.32
TOM1-217ENST00000497448 MROH7-TTC4A0A0A0MT08 1334 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms