RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 HLA-DOAP06340 250 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 PDE4BQ07343 736 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 C16orf86Q6ZW13 317 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 DHX32Q7L7V1 743 aaKnown RBP13.49□□□□□ -0.25
MCF2L-231ENST00000494043 FAM83AQ86UY5 434 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 STK11IPQ8N1F8 1099 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 FAM151AQ8WW52 585 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 SNX21Q969T3 373 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 DYNLL2Q96FJ2 89 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 TTC14Q96N46 770 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 INCENPQ9NQS7 918 aa13.49□□□□□ -0.25
MCF2L-231ENST00000494043 ASTN2O75129 1339 aaPredicted RBP13.48□□□□□ -0.25
MCF2L-231ENST00000494043 WDR19Q8NEZ3 1342 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 DDTLA6NHG4 134 aaPredicted RBP13.48□□□□□ -0.25
MCF2L-231ENST00000494043 B4E1Z4 1266 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 ORC4O43929 436 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 TNNI2P48788 182 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 EXOSC10Q01780 885 aaKnown RBP13.48□□□□□ -0.25
MCF2L-231ENST00000494043 TNFAIP1Q13829 316 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 SH3BP5LQ7L8J4 393 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 ZSCAN29Q8IWY8 852 aaPredicted RBP13.48□□□□□ -0.25
MCF2L-231ENST00000494043 EHD4Q9H223 541 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 TOMM22Q9NS69 142 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 PDRG1Q9NUG6 133 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 HACL1Q9UJ83 578 aa13.48□□□□□ -0.25
MCF2L-231ENST00000494043 WDR90Q96KV7 1748 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 PRC1O43663 620 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 KDM4AO75164 1064 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 PRDM1O75626 825 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 CD2BP2O95400 341 aaKnown RBP13.47□□□□□ -0.25
MCF2L-231ENST00000494043 MCM5P33992 734 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 NT5C2P49902 561 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 HIRAP54198 1017 aaPredicted RBP13.47□□□□□ -0.25
MCF2L-231ENST00000494043 ANTXR2P58335 489 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 GABPAQ06546 454 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 RRP12Q5JTH9 1297 aaKnown RBP13.47□□□□□ -0.25
MCF2L-231ENST00000494043 CYB5R4Q7L1T6 521 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 APOBEC3FQ8IUX4 373 aaKnown RBP13.47□□□□□ -0.25
MCF2L-231ENST00000494043 SLC44A5Q8NCS7 719 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 NKX2-3Q8TAU0 364 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 ESR2Q92731 530 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 TCEANC2Q96MN5 208 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 ALDH8A1Q9H2A2 487 aaPredicted RBP13.47□□□□□ -0.25
MCF2L-231ENST00000494043 ZNF287Q9HBT7 754 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 PI4KBQ9UBF8 816 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 SERPINB13Q9UIV8 391 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 TAOK2Q9UL54 1235 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 SIPA1L1O43166 1804 aa13.47□□□□□ -0.25
MCF2L-231ENST00000494043 IQCA1LA6NCM1 817 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 CDK8P49336 464 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 AK2P54819 239 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 ANGEL2Q5VTE6 544 aaKnown RBP13.46□□□□□ -0.25
MCF2L-231ENST00000494043 HSCBQ8IWL3 235 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 CSRNP1Q96S65 589 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 TMEM39BQ9GZU3 492 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 GGA3Q9NZ52 723 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 SWAP70Q9UH65 585 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 PGAP2Q9UHJ9 254 aa13.46□□□□□ -0.25
MCF2L-231ENST00000494043 SCN4AP35499 1836 aa13.46□□□□□ -0.26
MCF2L-231ENST00000494043 PITPNM2Q9BZ72 1349 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 RANBP6O60518 1105 aaKnown RBP13.45□□□□□ -0.26
MCF2L-231ENST00000494043 EPHX2P34913 555 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 MCM2P49736 904 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 BECN1Q14457 450 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 RASA3Q14644 834 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 Q6ZUG5 572 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 USP50Q70EL3 339 aaPredicted RBP13.45□□□□□ -0.26
MCF2L-231ENST00000494043 CHST3Q7LGC8 479 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 METTL16Q86W50 562 aaKnown RBP13.45□□□□□ -0.26
MCF2L-231ENST00000494043 CRACR2BQ8N4Y2 399 aaPredicted RBP13.45□□□□□ -0.26
MCF2L-231ENST00000494043 TBC1D2Q9BYX2 928 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 TAF1DQ9H5J8 278 aaPredicted RBP13.45□□□□□ -0.26
MCF2L-231ENST00000494043 MKNK2Q9HBH9 465 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 ZSWIM5Q9P217 1185 aa13.45□□□□□ -0.26
MCF2L-231ENST00000494043 RASA1P20936 1047 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 SHMT1P34896 483 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 TOB2Q14106 344 aaPredicted RBP13.44□□□□□ -0.26
MCF2L-231ENST00000494043 ANKRD1Q15327 319 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 FOXP4Q8IVH2 680 aaPredicted RBP13.44□□□□□ -0.26
MCF2L-231ENST00000494043 FBXL16Q8N461 479 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 TMEM87BQ96K49 555 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 MTA3Q9BTC8 594 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 TRIM34Q9BYJ4 488 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 LRRC2Q9BYS8 371 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 AGXT2Q9BYV1 514 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 DEFB129Q9H1M3 183 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 DNAJC18Q9H819 358 aa13.44□□□□□ -0.26
MCF2L-231ENST00000494043 HERC5Q9UII4 1024 aaKnown RBP13.44□□□□□ -0.26
MCF2L-231ENST00000494043 TSPY2A6NKD2 308 aa13.43□□□□□ -0.26
MCF2L-231ENST00000494043 POTECB2RU33 542 aa13.43□□□□□ -0.26
MCF2L-231ENST00000494043 K7ELQ4 463 aaPredicted RBP13.43□□□□□ -0.26
MCF2L-231ENST00000494043 SH2B2O14492 632 aaPredicted RBP13.43□□□□□ -0.26
MCF2L-231ENST00000494043 FGD1P98174 961 aa13.43□□□□□ -0.26
MCF2L-231ENST00000494043 SART3Q15020 963 aaKnown RBP13.43□□□□□ -0.26
MCF2L-231ENST00000494043 FAM47AQ5JRC9 791 aa13.43□□□□□ -0.26
MCF2L-231ENST00000494043 NOL8Q76FK4 1167 aaKnown RBP13.43□□□□□ -0.26
MCF2L-231ENST00000494043 CDAN1Q8IWY9 1227 aa13.43□□□□□ -0.26
MCF2L-231ENST00000494043 ZNF444Q8N0Y2 327 aaPredicted RBP13.43□□□□□ -0.26
MCF2L-231ENST00000494043 TEPSINQ96N21 525 aa13.43□□□□□ -0.26
MCF2L-231ENST00000494043 UBAC1Q9BSL1 405 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms