RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 UNCXA6NJT0 531 aa13.1□□□□□ -0.31
COL6A3-214ENST00000493608 IGF2BP3O00425 579 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL6A3-214ENST00000493608 ZBTB48P10074 688 aaPredicted RBP13.1□□□□□ -0.31
COL6A3-214ENST00000493608 MS4A1P11836 297 aa13.1□□□□□ -0.31
COL6A3-214ENST00000493608 C20orf194Q5TEA3 1177 aa13.1□□□□□ -0.31
COL6A3-214ENST00000493608 ZNF384Q8TF68 577 aa13.1□□□□□ -0.31
COL6A3-214ENST00000493608 WRNIP1Q96S55 665 aa13.1□□□□□ -0.31
COL6A3-214ENST00000493608 TLR7Q9NYK1 1049 aaKnown RBP13.1□□□□□ -0.31
COL6A3-214ENST00000493608 RAI14Q9P0K7 980 aa13.1□□□□□ -0.31
COL6A3-214ENST00000493608 CSADQ9Y600 493 aa13.1□□□□□ -0.31
COL6A3-214ENST00000493608 PDS5AQ29RF7 1337 aaKnown RBP13.1□□□□□ -0.31
COL6A3-214ENST00000493608 CCDC85CA6NKD9 419 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 GPR25O00155 361 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 APBB1O00213 710 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 UQCRFS1P1P0C7P4 283 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 SLURP2P0DP57 97 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 BTDP43251 543 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 RGS3P49796 1198 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 INHBEP58166 350 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 PICALMQ13492 652 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 CCDC158Q5M9N0 1113 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 ZNF296Q8WUU4 475 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-214ENST00000493608 EAF2Q96CJ1 260 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-214ENST00000493608 PTPN18Q99952 460 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 GPR108Q9NPR9 543 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 LRP2BPQ9P2M1 347 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 GAKO14976 1311 aa13.09□□□□□ -0.31
COL6A3-214ENST00000493608 INPP5BP32019 993 aa13.08□□□□□ -0.32
COL6A3-214ENST00000493608 DCAF15Q66K64 600 aa13.08□□□□□ -0.32
COL6A3-214ENST00000493608 SLF2Q8IX21 1173 aa13.08□□□□□ -0.32
COL6A3-214ENST00000493608 NSUN4Q96CB9 384 aaKnown RBP13.08□□□□□ -0.32
COL6A3-214ENST00000493608 HOOK2Q96ED9 719 aa13.08□□□□□ -0.32
COL6A3-214ENST00000493608 ZNF341Q9BYN7 854 aa13.08□□□□□ -0.32
COL6A3-214ENST00000493608 DDX4Q9NQI0 724 aaKnown RBP13.08□□□□□ -0.32
COL6A3-214ENST00000493608 DBNLQ9UJU6 430 aaKnown RBP13.08□□□□□ -0.32
COL6A3-214ENST00000493608 SNCAIPQ9Y6H5 919 aa13.08□□□□□ -0.32
COL6A3-214ENST00000493608 MROH7-TTC4A0A0A0MT08 1334 aa13.08□□□□□ -0.32
COL6A3-214ENST00000493608 GPR75-ASB3A0A0A6YYF3 556 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 WDHD1O75717 1129 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-214ENST00000493608 CYP2E1P05181 493 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-214ENST00000493608 ZAP70P43403 619 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 PPP4R3BQ5MIZ7 849 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 SH3BP5LQ7L8J4 393 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 ZSCAN29Q8IWY8 852 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-214ENST00000493608 SIRT2Q8IXJ6 389 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 IL1RAPL2Q9NP60 686 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 ZBTB40Q9NUA8 1239 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 DDX19BQ9UMR2 479 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 NDUFB9Q9Y6M9 179 aa13.07□□□□□ -0.32
COL6A3-214ENST00000493608 CCL15-CCL14A0A0B4J2E2 113 aa13.06□□□□□ -0.32
COL6A3-214ENST00000493608 DDTLA6NHG4 134 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-214ENST00000493608 ALDH1A1P00352 501 aa13.06□□□□□ -0.32
COL6A3-214ENST00000493608 LDHCP07864 332 aa13.06□□□□□ -0.32
COL6A3-214ENST00000493608 RHBDL3P58872 404 aa13.06□□□□□ -0.32
COL6A3-214ENST00000493608 CCL15Q16663 113 aa13.06□□□□□ -0.32
COL6A3-214ENST00000493608 CTU1Q7Z7A3 348 aaKnown RBP13.06□□□□□ -0.32
COL6A3-214ENST00000493608 IDI2Q9BXS1 227 aa13.06□□□□□ -0.32
COL6A3-214ENST00000493608 LAMB1P07942 1786 aa13.06□□□□□ -0.32
COL6A3-214ENST00000493608 RPAP1Q9BWH6 1393 aaPredicted RBP13.06□□□□□ -0.32
COL6A3-214ENST00000493608 TESPA1A2RU30 521 aaPredicted RBP13.05□□□□□ -0.32
COL6A3-214ENST00000493608 IRF6O14896 467 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 FKTNO75072 461 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 ENTPD3O75355 529 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 GSTO1P78417 241 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 CRHR2Q13324 411 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 DMRTA1Q5VZB9 504 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 OTUD7BQ6GQQ9 843 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 AACSQ86V21 672 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 ERO1BQ86YB8 467 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 RHPN1Q8TCX5 695 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 BRI3BPQ8WY22 251 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 PIH1D3Q9NQM4 214 aaKnown RBP13.05□□□□□ -0.32
COL6A3-214ENST00000493608 EMILIN3Q9NT22 766 aa13.05□□□□□ -0.32
COL6A3-214ENST00000493608 DOCK2Q92608 1830 aa13.04□□□□□ -0.32
COL6A3-214ENST00000493608 SPDYE5A6NIY4 337 aa13.04□□□□□ -0.32
COL6A3-214ENST00000493608 PSEN2P49810 448 aa13.04□□□□□ -0.32
COL6A3-214ENST00000493608 GTF2A2P52657 109 aa13.04□□□□□ -0.32
COL6A3-214ENST00000493608 NAA16Q6N069 864 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-214ENST00000493608 ERC1Q8IUD2 1116 aa13.04□□□□□ -0.32
COL6A3-214ENST00000493608 RPAP2Q8IXW5 612 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-214ENST00000493608 FAM43AQ8N2R8 423 aa13.04□□□□□ -0.32
COL6A3-214ENST00000493608 SH3RF3Q8TEJ3 882 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-214ENST00000493608 YTHDC1Q96MU7 727 aaKnown RBP13.04□□□□□ -0.32
COL6A3-214ENST00000493608 CFHR5Q9BXR6 569 aa13.04□□□□□ -0.32
COL6A3-214ENST00000493608 ZNF112Q9UJU3 913 aa13.04□□□□□ -0.32
COL6A3-214ENST00000493608 FAM196BA6NMK8 535 aa13.03□□□□□ -0.32
COL6A3-214ENST00000493608 ADGRA1Q86SQ6 560 aa13.03□□□□□ -0.32
COL6A3-214ENST00000493608 TEX11Q8IYF3 940 aa13.03□□□□□ -0.32
COL6A3-214ENST00000493608 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-214ENST00000493608 ZNF512BQ96KM6 892 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-214ENST00000493608 ANTXR1Q9H6X2 564 aa13.03□□□□□ -0.32
COL6A3-214ENST00000493608 AATFQ9NY61 560 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL6A3-214ENST00000493608 RFX7Q2KHR2 1363 aa13.03□□□□□ -0.32
COL6A3-214ENST00000493608 PHF20L1A8MW92 1017 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 HMMRO75330 724 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 FOSBP53539 338 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 PPIL2Q13356 520 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 SNAPC2Q13487 334 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 PDE3AQ14432 1141 aa13.02□□□□□ -0.33
COL6A3-214ENST00000493608 HSP90AB4PQ58FF6 505 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms