RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 TRIM10Q9UDY6 481 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 CAPN7Q9Y6W3 813 aa13.27□□□□□ -0.28
HDAC4-210ENST00000493582 UTYO14607 1347 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 CCDC196A0A1B0GTZ2 297 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 MYO1FO00160 1098 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 MFAP3LO75121 409 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 ARHGAP25P42331 645 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 AMPD2Q01433 879 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 PTPN12Q05209 780 aaKnown RBP13.27□□□□□ -0.29
HDAC4-210ENST00000493582 RIC3Q7Z5B4 369 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 MMS19Q96T76 1030 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 NAA15Q9BXJ9 866 aaKnown RBP13.27□□□□□ -0.29
HDAC4-210ENST00000493582 SERTAD1Q9UHV2 236 aa13.27□□□□□ -0.29
HDAC4-210ENST00000493582 POLR2DO15514 142 aaKnown RBP13.26□□□□□ -0.29
HDAC4-210ENST00000493582 CDC25AP30304 524 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 KRT40Q6A162 431 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 APTXQ7Z2E3 356 aaKnown RBP13.26□□□□□ -0.29
HDAC4-210ENST00000493582 MLKLQ8NB16 471 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 CAPZA3Q96KX2 299 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 SLF1Q9BQI6 1058 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 GUCA1BQ9UMX6 200 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 TTF2Q9UNY4 1162 aaKnown RBP13.26□□□□□ -0.29
HDAC4-210ENST00000493582 PALLDQ8WX93 1383 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 FAM237AA0A1B0GTK4 181 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 ERVK-24P63145 666 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 NBPF3Q9H094 633 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 HELLSQ9NRZ9 838 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 RNF225M0QZC1 329 aaPredicted RBP13.26□□□□□ -0.29
HDAC4-210ENST00000493582 GYPCP04921 128 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 TTC39AQ5SRH9 613 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 PHKBQ93100 1093 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 CAPS2Q9BXY5 557 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 PAG1Q9NWQ8 432 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 TFR2Q9UP52 801 aa13.26□□□□□ -0.29
HDAC4-210ENST00000493582 MAST3O60307 1309 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 UBE2Q2LH0YL09 131 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 COBLO75128 1261 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 A1BGP04217 495 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 USP8P40818 1118 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 MORC3Q14149 939 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 ZMYM1Q5SVZ6 1142 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 ANKRD24Q8TF21 1146 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 COPRSQ9NQ92 184 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 H0YHG0 523 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 TIMM10P62072 90 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 GNGT1P63211 74 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 MAP9Q49MG5 647 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 SELENOOQ9BVL4 669 aa13.25□□□□□ -0.29
HDAC4-210ENST00000493582 M0R2C6 588 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 IBSPP21815 317 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-210ENST00000493582 CPLX2Q6PUV4 134 aaKnown RBP13.24□□□□□ -0.29
HDAC4-210ENST00000493582 CD248Q9HCU0 757 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 TOPAZ1Q8N9V7 1692 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 SHTN1A0MZ66 631 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 MYL6BP14649 208 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 RFX5P48382 616 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-210ENST00000493582 SARSP49591 514 aaKnown RBP13.24□□□□□ -0.29
HDAC4-210ENST00000493582 ANTXR2P58335 489 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 GBP6Q6ZN66 633 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 ZNF622Q969S3 477 aaKnown RBP eCLIP13.24□□□□□ -0.29
HDAC4-210ENST00000493582 ADD3Q9UEY8 706 aaKnown RBP13.24□□□□□ -0.29
HDAC4-210ENST00000493582 DACH1Q9UI36 760 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 WWC3Q9ULE0 1092 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 GOLGA6BA6NDN3 693 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 NEURL1BA8MQ27 555 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 DDX58O95786 925 aaKnown RBP13.24□□□□□ -0.29
HDAC4-210ENST00000493582 SCP2P22307 547 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 GCKRQ14397 625 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 CNPY4Q8N129 248 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 MYD88Q99836 296 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.24□□□□□ -0.29
HDAC4-210ENST00000493582 DENND2AQ9ULE3 1009 aa13.24□□□□□ -0.29
HDAC4-210ENST00000493582 GRIN2DO15399 1336 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 EIF3HO15372 352 aaKnown RBP eCLIP13.23□□□□□ -0.29
HDAC4-210ENST00000493582 KIF1CO43896 1103 aaKnown RBP13.23□□□□□ -0.29
HDAC4-210ENST00000493582 CASP1P29466 404 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 CCT6AP40227 531 aaKnown RBP13.23□□□□□ -0.29
HDAC4-210ENST00000493582 PBX1P40424 430 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 TDO2P48775 406 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 POTEDQ86YR6 584 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 SMYD4Q8IYR2 804 aaPredicted RBP13.23□□□□□ -0.29
HDAC4-210ENST00000493582 KRI1Q8N9T8 703 aaKnown RBP13.23□□□□□ -0.29
HDAC4-210ENST00000493582 PRPF38AQ8NAV1 312 aaKnown RBP13.23□□□□□ -0.29
HDAC4-210ENST00000493582 OSBP2Q969R2 916 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 POLD4Q9HCU8 107 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 ATP1A1P05023 1023 aaKnown RBP13.23□□□□□ -0.29
HDAC4-210ENST00000493582 CD44P16070 742 aaKnown RBP13.23□□□□□ -0.29
HDAC4-210ENST00000493582 PPFIA1Q13136 1202 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 CNGA4Q8IV77 575 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 CABS1Q96KC9 395 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 RFX7Q2KHR2 1363 aa13.23□□□□□ -0.29
HDAC4-210ENST00000493582 PLCD1P51178 756 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 NT5DC1Q5TFE4 455 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 USP49Q70CQ1 688 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 TRAPPC11Q7Z392 1133 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 CHP1Q99653 195 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 NWD1Q149M9 1564 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 SETQ01105 290 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-210ENST00000493582 TRDNQ13061 729 aa13.22□□□□□ -0.29
HDAC4-210ENST00000493582 HSP90AB3PQ58FF7 597 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms