RNA–Protein interactions for RNA: ENST00000486828.6

PDLIM7-207, Transcript of PDZ and LIM domain 7, humanhuman

TSL 1 (best)

Gene PDLIM7, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-207ENST00000486828 DPCR1Q3MIW9 517 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 CAVIN4Q5BKX8 364 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 PKNOX2Q96KN3 472 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 CNTNAP4Q9C0A0 1308 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 UBE2Q2LH0YL09 131 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 NLRP12P59046 1061 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 SLC10A5Q5PT55 438 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 SHC4Q6S5L8 630 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 TRIM22Q8IYM9 498 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 SDR42E1Q8WUS8 393 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 FBXW7Q969H0 707 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 RIOK1Q9BRS2 568 aaKnown RBP20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 MINPP1Q9UNW1 487 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 CACNA1SQ13698 1873 aa20.78■□□□□ 0.92
PDLIM7-207ENST00000486828 CCDC196A0A1B0GTZ2 297 aa20.77■□□□□ 0.92
PDLIM7-207ENST00000486828 MMP1P03956 469 aa20.77■□□□□ 0.92
PDLIM7-207ENST00000486828 SYKP43405 635 aa20.77■□□□□ 0.92
PDLIM7-207ENST00000486828 NBPF11Q86T75 865 aa20.77■□□□□ 0.92
PDLIM7-207ENST00000486828 CACTINQ8WUQ7 758 aaKnown RBP20.77■□□□□ 0.92
PDLIM7-207ENST00000486828 TAOK2Q9UL54 1235 aa20.77■□□□□ 0.92
PDLIM7-207ENST00000486828 GUCY1A2P33402 732 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 RESP18Q5W5W9 173 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 NOSTRINQ8IVI9 506 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 ZNF654Q8IZM8 581 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 UBAC1Q9BSL1 405 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 TAF1P21675 1872 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 WTIPA6NIX2 430 aaPredicted RBP20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 NEMFO60524 1076 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 CUTAO60888 179 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 GTF2F1P35269 517 aaKnown RBP eCLIP20.76■□□□□ 0.913e-6■■□□□ 12.7
PDLIM7-207ENST00000486828 SAFBQ15424 915 aaKnown RBP eCLIP20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 STK11IPQ8N1F8 1099 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 CRACR2BQ8N4Y2 399 aaPredicted RBP20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 ESR2Q92731 530 aa20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 FAM84BQ96KN1 310 aaPredicted RBP20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 BCL11BQ9C0K0 894 aaPredicted RBP20.76■□□□□ 0.91
PDLIM7-207ENST00000486828 MINDY4BA8MYZ0 360 aa20.75■□□□□ 0.91
PDLIM7-207ENST00000486828 DEXIO95424 95 aa20.75■□□□□ 0.91
PDLIM7-207ENST00000486828 TBC1D9BQ66K14 1250 aa20.75■□□□□ 0.91
PDLIM7-207ENST00000486828 FANCBQ8NB91 859 aa20.75■□□□□ 0.91
PDLIM7-207ENST00000486828 CELF1Q92879 486 aaKnown RBP20.75■□□□□ 0.91
PDLIM7-207ENST00000486828 GTF2E1P29083 439 aaPredicted RBP20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 RBM10P98175 930 aaKnown RBP20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 SEC23AQ15436 765 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 BICDL1Q6ZP65 573 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 LRRC8AQ8IWT6 810 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 BRIP1Q9BX63 1249 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 FOXP1Q9H334 677 aaPredicted RBP20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 BCL2L12Q9HB09 334 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 TUBE1Q9UJT0 475 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 BTAF1O14981 1849 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 BTBD18B2RXH4 712 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 SEMA3EO15041 775 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 TRIM37O94972 964 aa20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 DIS3L2Q8IYB7 885 aaKnown RBP20.74■□□□□ 0.91
PDLIM7-207ENST00000486828 DUOX1Q9NRD9 1551 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 TNKSO95271 1327 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 BIN1O00499 593 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 KCNQ4P56696 695 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 CHAF1AQ13111 956 aaPredicted RBP20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 PPP2R5BQ15173 497 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 FBXO33Q7Z6M2 555 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 CLIC6Q96NY7 704 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 NYXQ9GZU5 481 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 PDCL3Q9H2J4 239 aa20.73■□□□□ 0.91
PDLIM7-207ENST00000486828 DYNLL1P63167 89 aaKnown RBP20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 NUP133Q8WUM0 1156 aa20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 FAM13BQ9NYF5 915 aa20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 KCNJ14Q9UNX9 436 aa20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 SMTNL1A8MU46 457 aa20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 TPM4P67936 248 aa20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 RC3H1Q5TC82 1133 aaKnown RBP20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 KRI1Q8N9T8 703 aaKnown RBP20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 NARFQ9UHQ1 456 aa20.72■□□□□ 0.91
PDLIM7-207ENST00000486828 PDS5AQ29RF7 1337 aaKnown RBP20.71■□□□□ 0.91
PDLIM7-207ENST00000486828 COL24A1Q17RW2 1714 aa20.71■□□□□ 0.91
PDLIM7-207ENST00000486828 PCP11498 1178 aaKnown RBP20.71■□□□□ 0.91
PDLIM7-207ENST00000486828 TOB1P50616 345 aaPredicted RBP20.71■□□□□ 0.91
PDLIM7-207ENST00000486828 RILPL1Q5EBL4 403 aa20.71■□□□□ 0.91
PDLIM7-207ENST00000486828 ZNF384Q8TF68 577 aa20.71■□□□□ 0.91
PDLIM7-207ENST00000486828 RPS8P62241 208 aaKnown RBP20.7■□□□□ 0.91
PDLIM7-207ENST00000486828 NCAPHQ15003 741 aa20.7■□□□□ 0.91
PDLIM7-207ENST00000486828 CMTR1Q8N1G2 835 aaKnown RBP20.7■□□□□ 0.91
PDLIM7-207ENST00000486828 CCDC82Q8N4S0 544 aa20.7■□□□□ 0.91
PDLIM7-207ENST00000486828 ZSCAN10Q96SZ4 725 aaPredicted RBP20.7■□□□□ 0.91
PDLIM7-207ENST00000486828 MAP7D2Q96T17 732 aa20.7■□□□□ 0.91
PDLIM7-207ENST00000486828 RNF26Q9BY78 433 aaPredicted RBP20.7■□□□□ 0.91
PDLIM7-207ENST00000486828 SMIM22K7EJ46 135 aa20.7■□□□□ 0.9
PDLIM7-207ENST00000486828 IKBKBO14920 756 aa20.7■□□□□ 0.9
PDLIM7-207ENST00000486828 RPS6KA4O75676 772 aa20.7■□□□□ 0.9
PDLIM7-207ENST00000486828 FGRP09769 529 aa20.7■□□□□ 0.9
PDLIM7-207ENST00000486828 ARID5BQ14865 1188 aa20.7■□□□□ 0.9
PDLIM7-207ENST00000486828 NLRP3Q96P20 1036 aa20.7■□□□□ 0.9
PDLIM7-207ENST00000486828 IMPACTQ9P2X3 320 aa20.7■□□□□ 0.9
PDLIM7-207ENST00000486828 KCNH3Q9ULD8 1083 aa20.7■□□□□ 0.9
PDLIM7-207ENST00000486828 GSDMDP57764 484 aa20.69■□□□□ 0.9
PDLIM7-207ENST00000486828 KRBA2Q6ZNG9 492 aa20.69■□□□□ 0.9
PDLIM7-207ENST00000486828 SMIM5Q71RC9 77 aa20.69■□□□□ 0.9
PDLIM7-207ENST00000486828 FILIP1Q7Z7B0 1213 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms