RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 DDX60Q8IY21 1712 aaKnown RBP8.67□□□□□ -1.02
HDAC3-209ENST00000486618 EXOC8Q8IYI6 725 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 AGBL3Q8NEM8 1001 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 CELF1Q92879 486 aaKnown RBP8.67□□□□□ -1.02
HDAC3-209ENST00000486618 PLEKHF1Q96S99 279 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 DUOX1Q9NRD9 1551 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 POLLQ9UGP5 575 aa8.67□□□□□ -1.02
HDAC3-209ENST00000486618 RTL9Q8NET4 1388 aa8.66□□□□□ -1.02
HDAC3-209ENST00000486618 PITPNM2Q9BZ72 1349 aa8.66□□□□□ -1.02
HDAC3-209ENST00000486618 RPS8P62241 208 aaKnown RBP8.66□□□□□ -1.02
HDAC3-209ENST00000486618 NFX1Q12986 1120 aaKnown RBP8.66□□□□□ -1.02
HDAC3-209ENST00000486618 SCARF1Q14162 830 aa8.66□□□□□ -1.02
HDAC3-209ENST00000486618 ANGEL2Q5VTE6 544 aaKnown RBP8.66□□□□□ -1.02
HDAC3-209ENST00000486618 FBXO46Q6PJ61 603 aaPredicted RBP8.66□□□□□ -1.02
HDAC3-209ENST00000486618 ZBTB33Q86T24 672 aa8.66□□□□□ -1.02
HDAC3-209ENST00000486618 TBC1D16Q8TBP0 767 aa8.66□□□□□ -1.02
HDAC3-209ENST00000486618 ZNF296Q8WUU4 475 aaPredicted RBP8.66□□□□□ -1.02
HDAC3-209ENST00000486618 SLC10A4Q96EP9 437 aa8.66□□□□□ -1.02
HDAC3-209ENST00000486618 PURBQ96QR8 312 aaKnown RBP8.66□□□□□ -1.02
HDAC3-209ENST00000486618 TRIM34Q9BYJ4 488 aa8.66□□□□□ -1.02
HDAC3-209ENST00000486618 KCNQ5Q9NR82 932 aa8.66□□□□□ -1.02
HDAC3-209ENST00000486618 GPR25O00155 361 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 TRAK2O60296 914 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 TBC1D8O95759 1140 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 NF2P35240 595 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 TM4SF4P48230 202 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 ZNF280AP59817 542 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-209ENST00000486618 PTK2Q05397 1052 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 LMOD3Q0VAK6 560 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 SREBF2Q12772 1141 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 GLIPR1L2Q4G1C9 344 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 ERICH6BQ5W0A0 696 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 CCDC116Q8IYX3 515 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 CNPY4Q8N129 248 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 PLBD2Q8NHP8 589 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 FAM89AQ96GI7 184 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 ANKIB1Q9P2G1 1089 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 GPSM3Q9Y4H4 160 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 PAPPA2Q9BXP8 1791 aa8.65□□□□□ -1.02
HDAC3-209ENST00000486618 KIAA0100Q14667 2235 aaKnown RBP8.65□□□□□ -1.03
HDAC3-209ENST00000486618 SCN9AQ15858 1988 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 ASTN2O75129 1339 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-209ENST00000486618 UBE2Q2LH0YL09 131 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 FKTNO75072 461 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 WFS1O76024 890 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 UFL1O94874 794 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 RIPK4P57078 832 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 PNMA1Q8ND90 353 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 ADAM32Q8TC27 787 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 ISCA1Q9BUE6 129 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 MYOZ2Q9NPC6 264 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 GGA1Q9UJY5 639 aa8.64□□□□□ -1.03
HDAC3-209ENST00000486618 ZNF609O15014 1411 aa8.63□□□□□ -1.03
HDAC3-209ENST00000486618 LOC102724159A0A0B4J2E5 919 aa8.63□□□□□ -1.03
HDAC3-209ENST00000486618 IRS4O14654 1257 aaPredicted RBP8.63□□□□□ -1.03
HDAC3-209ENST00000486618 TRIM28Q13263 835 aaKnown RBP8.63□□□□□ -1.03
HDAC3-209ENST00000486618 PWP2Q15269 919 aaKnown RBP8.63□□□□□ -1.03
HDAC3-209ENST00000486618 INTS3Q68E01 1043 aaKnown RBP8.63□□□□□ -1.03
HDAC3-209ENST00000486618 NOL8Q76FK4 1167 aaKnown RBP8.63□□□□□ -1.03
HDAC3-209ENST00000486618 PODNQ7Z5L7 613 aa8.63□□□□□ -1.03
HDAC3-209ENST00000486618 MEIOBQ8N635 442 aa8.63□□□□□ -1.03
HDAC3-209ENST00000486618 DNAJC2Q99543 621 aaKnown RBP8.63□□□□□ -1.03
HDAC3-209ENST00000486618 CFHR5Q9BXR6 569 aa8.63□□□□□ -1.03
HDAC3-209ENST00000486618 CDV3Q9UKY7 258 aaKnown RBP8.63□□□□□ -1.03
HDAC3-209ENST00000486618 PSME4Q14997 1843 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 USP17L3A6NCW0 530 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 USP17L4A6NCW7 530 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 A6NJR5 290 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 ATP5J2-PTCD1G3V325 749 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 TERTO14746 1132 aaKnown RBP8.62□□□□□ -1.03
HDAC3-209ENST00000486618 MMP14P50281 582 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 HABP4Q5JVS0 413 aaKnown RBP8.62□□□□□ -1.03
HDAC3-209ENST00000486618 MOB2Q70IA6 237 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 USP17L1Q7RTZ2 530 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 ARMC9Q7Z3E5 817 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 OGFOD1Q8N543 542 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 GPATCH11Q8N954 259 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 KCTD15Q96SI1 283 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-209ENST00000486618 GMLQ99445 158 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 HYPKQ9NX55 129 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 CHPF2Q9P2E5 772 aa8.62□□□□□ -1.03
HDAC3-209ENST00000486618 DBF4Q9UBU7 674 aaPredicted RBP8.62□□□□□ -1.03
HDAC3-209ENST00000486618 XDHP47989 1333 aa8.61□□□□□ -1.03
HDAC3-209ENST00000486618 PATL2C9JE40 543 aaKnown RBP8.61□□□□□ -1.03
HDAC3-209ENST00000486618 HOXB7P09629 217 aa8.61□□□□□ -1.03
HDAC3-209ENST00000486618 ATP2B4P23634 1241 aa8.61□□□□□ -1.03
HDAC3-209ENST00000486618 INHBEP58166 350 aa8.61□□□□□ -1.03
HDAC3-209ENST00000486618 CCDC152Q4G0S7 254 aa8.61□□□□□ -1.03
HDAC3-209ENST00000486618 PPP1R26Q5T8A7 1209 aaPredicted RBP8.61□□□□□ -1.03
HDAC3-209ENST00000486618 LCE2CQ5TA81 110 aa8.61□□□□□ -1.03
HDAC3-209ENST00000486618 HDGFL1Q5TGJ6 251 aa8.61□□□□□ -1.03
HDAC3-209ENST00000486618 LINC00528Q8N1L1 170 aa8.61□□□□□ -1.03
HDAC3-209ENST00000486618 MYO3BQ8WXR4 1341 aa8.6□□□□□ -1.03
HDAC3-209ENST00000486618 CHL1O00533 1208 aa8.6□□□□□ -1.03
HDAC3-209ENST00000486618 PTMAP06454 111 aaKnown RBP8.6□□□□□ -1.03
HDAC3-209ENST00000486618 TMPOP42166 694 aaKnown RBP8.6□□□□□ -1.03
HDAC3-209ENST00000486618 NBPF9Q3BBW0 867 aa8.6□□□□□ -1.03
HDAC3-209ENST00000486618 INTS6LQ5JSJ4 861 aaKnown RBP8.6□□□□□ -1.03
HDAC3-209ENST00000486618 C6orf118Q5T5N4 469 aa8.6□□□□□ -1.03
HDAC3-209ENST00000486618 PRAMEF18Q5VWM3 479 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms