RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 GPR25O00155 361 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 BTDP43251 543 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 GTF2A2P52657 109 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 VGLL4Q14135 290 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 PI16Q6UXB8 463 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 TBC1D9Q6ZT07 1266 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 CERS3Q8IU89 383 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 CLASRPQ8N2M8 674 aaKnown RBP8.57□□□□□ -1.04
VPS50-218ENST00000485994 SPOCK2Q92563 424 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 OPTNQ96CV9 577 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 CCDC8Q9H0W5 538 aaPredicted RBP8.57□□□□□ -1.04
VPS50-218ENST00000485994 LRP2BPQ9P2M1 347 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 TSKSQ9UJT2 592 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 RFX7Q2KHR2 1363 aa8.57□□□□□ -1.04
VPS50-218ENST00000485994 MYO5AQ9Y4I1 1855 aaKnown RBP8.56□□□□□ -1.04
VPS50-218ENST00000485994 IGF2BP3O00425 579 aaKnown RBP eCLIP8.56□□□□□ -1.04
VPS50-218ENST00000485994 CXCL11O14625 94 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 TBC1D8O95759 1140 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 BAG3O95817 575 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 ZAP70P43403 619 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 RGS3P49796 1198 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 PPIL2Q13356 520 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 SH3BP5LQ7L8J4 393 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 ZFPM1Q8IX07 1006 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 ABHD8Q96I13 439 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 WRNIP1Q96S55 665 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 PTPN18Q99952 460 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 MCOLN1Q9GZU1 580 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 ELP3Q9H9T3 547 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 DDX4Q9NQI0 724 aaKnown RBP8.56□□□□□ -1.04
VPS50-218ENST00000485994 RAI14Q9P0K7 980 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 KCNH4Q9UQ05 1017 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 EXOC6BQ9Y2D4 811 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 SNCAIPQ9Y6H5 919 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 ATRNL1Q5VV63 1379 aa8.56□□□□□ -1.04
VPS50-218ENST00000485994 COL2A1P02458 1487 aaPredicted RBP8.56□□□□□ -1.04
VPS50-218ENST00000485994 DDTLA6NHG4 134 aaPredicted RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 CTNND1O60716 968 aaKnown RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 FKTNO75072 461 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 CETPP11597 493 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 RGS19P49795 217 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 TCP10Q12799 353 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 SNAPC2Q13487 334 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 TTF1Q15361 905 aaPredicted RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 C20orf194Q5TEA3 1177 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 NAA16Q6N069 864 aaPredicted RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 MIGA2Q7L4E1 593 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 CTU1Q7Z7A3 348 aaKnown RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 METTL16Q86W50 562 aaKnown RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 FOXP4Q8IVH2 680 aaPredicted RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 ZNF296Q8WUU4 475 aaPredicted RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 ZKSCAN4Q969J2 545 aaPredicted RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 DHX36Q9H2U1 1008 aaKnown RBP8.55□□□□□ -1.04
VPS50-218ENST00000485994 DCTPP1Q9H773 170 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 OTOFQ9HC10 1997 aa8.55□□□□□ -1.04
VPS50-218ENST00000485994 IRF6O14896 467 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 INPP5BP32019 993 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 DGKZQ13574 1117 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 AAMPQ13685 434 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 AACSQ86V21 672 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 BRI3BPQ8WY22 251 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 NOL10Q9BSC4 688 aaKnown RBP8.54□□□□□ -1.04
VPS50-218ENST00000485994 TBC1D2Q9BYX2 928 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 OSBPL5Q9H0X9 879 aaPredicted RBP8.54□□□□□ -1.04
VPS50-218ENST00000485994 R3HDMLQ9H3Y0 253 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 SNRKQ9NRH2 765 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 GINM1Q9NU53 330 aa8.54□□□□□ -1.04
VPS50-218ENST00000485994 TLR7Q9NYK1 1049 aaKnown RBP8.54□□□□□ -1.04
VPS50-218ENST00000485994 HERC5Q9UII4 1024 aaKnown RBP8.54□□□□□ -1.04
VPS50-218ENST00000485994 CCL15-CCL14A0A0B4J2E2 113 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 IFIT2P09913 472 aaKnown RBP8.53□□□□□ -1.04
VPS50-218ENST00000485994 ATP5JP18859 108 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 MAP3K12Q12852 859 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 CCL15Q16663 113 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 POTEEQ6S8J3 1075 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 ANKRD23Q86SG2 305 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 TEX11Q8IYF3 940 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 SCYL3Q8IZE3 742 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 ZFYVE28Q9HCC9 887 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 IL1RAPL2Q9NP60 686 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 PIH1D3Q9NQM4 214 aaKnown RBP8.53□□□□□ -1.04
VPS50-218ENST00000485994 PI4KBQ9UBF8 816 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 TAOK2Q9UL54 1235 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 SLC45A1Q9Y2W3 748 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 AFG3L2Q9Y4W6 797 aa8.53□□□□□ -1.04
VPS50-218ENST00000485994 BTBD19C9JJ37 291 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 TLR2O60603 784 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 PTPRAP18433 802 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 SP3Q02447 781 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 MOGSQ13724 837 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 ARHGEF6Q15052 776 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 FASTKD5Q7L8L6 764 aaKnown RBP8.52□□□□□ -1.05
VPS50-218ENST00000485994 ZSCAN29Q8IWY8 852 aaPredicted RBP8.52□□□□□ -1.05
VPS50-218ENST00000485994 SH3RF3Q8TEJ3 882 aaPredicted RBP8.52□□□□□ -1.05
VPS50-218ENST00000485994 ERO1AQ96HE7 468 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 LRRCC1Q9C099 1032 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.52□□□□□ -1.05
VPS50-218ENST00000485994 ZSWIM6Q9HCJ5 1215 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 FOCADQ5VW36 1801 aa8.52□□□□□ -1.05
VPS50-218ENST00000485994 DOCK2Q92608 1830 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms