RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TMED8Q6PL24 325 aaPredicted RBP9.7□□□□□ -0.86
USP40-216ENST00000485943 SIRT2Q8IXJ6 389 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP40-216ENST00000485943 CSRNP1Q96S65 589 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 FSD1Q9BTV5 496 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 CDHR5Q9HBB8 845 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 PCDHGA10Q9Y5H3 936 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 PCDHAC2Q9Y5I4 1007 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 WDR33Q9C0J8 1336 aaKnown RBP9.7□□□□□ -0.86
USP40-216ENST00000485943 CNTNAP1P78357 1384 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 MAGEB6P1A0A0J9YX57 407 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 UBE2Q2LH0YL09 131 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 GLRX3O76003 335 aaKnown RBP9.69□□□□□ -0.86
USP40-216ENST00000485943 ATP5JP18859 108 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 MX1P20591 662 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 NOGQ13253 232 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 HDAC1Q13547 482 aaPredicted RBP9.69□□□□□ -0.86
USP40-216ENST00000485943 OTUD7BQ6GQQ9 843 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 CDC42EP5Q6NZY7 148 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 MAST2Q6P0Q8 1798 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 TTC41PQ6P2S7 1318 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 SAPCD2Q86UD0 394 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 FAM83AQ86UY5 434 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 ANKRD13AQ8IZ07 590 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 FAM151AQ8WW52 585 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 NSUN4Q96CB9 384 aaKnown RBP9.69□□□□□ -0.86
USP40-216ENST00000485943 PAPPA2Q9BXP8 1791 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 ZNF341Q9BYN7 854 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 CRNKL1Q9BZJ0 848 aaKnown RBP9.69□□□□□ -0.86
USP40-216ENST00000485943 LNPKQ9C0E8 428 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 TMEM39BQ9GZU3 492 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 PICK1Q9NRD5 415 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 NDUFB9Q9Y6M9 179 aa9.69□□□□□ -0.86
USP40-216ENST00000485943 RASSF10A6NK89 507 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 CYP2E1P05181 493 aaPredicted RBP9.68□□□□□ -0.86
USP40-216ENST00000485943 POLR3DP05423 398 aaPredicted RBP9.68□□□□□ -0.86
USP40-216ENST00000485943 VEGFBP49765 207 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 RGS3P49796 1198 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 SREBF2Q12772 1141 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 GRIK5Q16478 980 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 AMHR2Q16671 573 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 NBPF12Q5TAG4 269 aaPredicted RBP9.68□□□□□ -0.86
USP40-216ENST00000485943 FKBP1CQ5VVH2 108 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 CST9Q5W186 159 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 MIGA1Q8NAN2 632 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 TGFBRAP1Q8WUH2 860 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 RILPL2Q969X0 211 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 HHIPL1Q96JK4 782 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 WRNIP1Q96S55 665 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 EPAS1Q99814 870 aa9.68□□□□□ -0.86
USP40-216ENST00000485943 NPDC1Q9NQX5 325 aaPredicted RBP9.68□□□□□ -0.86
USP40-216ENST00000485943 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.68□□□□□ -0.86
USP40-216ENST00000485943 ZNF646O15015 1829 aaPredicted RBP9.68□□□□□ -0.86
USP40-216ENST00000485943 ENTPD3O75355 529 aa9.67□□□□□ -0.86
USP40-216ENST00000485943 APPP05067 770 aa9.67□□□□□ -0.86
USP40-216ENST00000485943 ZFYP08048 801 aaPredicted RBP9.67□□□□□ -0.86
USP40-216ENST00000485943 APOBEC3HQ6NTF7 200 aaKnown RBP9.67□□□□□ -0.86
USP40-216ENST00000485943 DLK2Q6UY11 383 aa9.67□□□□□ -0.86
USP40-216ENST00000485943 MIGA2Q7L4E1 593 aa9.67□□□□□ -0.86
USP40-216ENST00000485943 MAPKAPK5Q8IW41 473 aa9.67□□□□□ -0.86
USP40-216ENST00000485943 CCDC136Q96JN2 1154 aa9.67□□□□□ -0.86
USP40-216ENST00000485943 HAUS7Q99871 368 aa9.67□□□□□ -0.86
USP40-216ENST00000485943 DHX36Q9H2U1 1008 aaKnown RBP9.67□□□□□ -0.86
USP40-216ENST00000485943 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.67□□□□□ -0.86
USP40-216ENST00000485943 PIH1D3Q9NQM4 214 aaKnown RBP9.67□□□□□ -0.86
USP40-216ENST00000485943 GAKO14976 1311 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 ZNF532Q9HCE3 1301 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 GPR75-ASB3A0A0A6YYF3 556 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 HOXB3P14651 431 aaPredicted RBP9.66□□□□□ -0.86
USP40-216ENST00000485943 MAP2K2P36507 400 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 TTC6Q86TZ1 520 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 CHD1LQ86WJ1 897 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 SH3RF3Q8TEJ3 882 aaPredicted RBP9.66□□□□□ -0.86
USP40-216ENST00000485943 FAM163AQ96GL9 167 aaPredicted RBP9.66□□□□□ -0.86
USP40-216ENST00000485943 ZBED3Q96IU2 234 aaPredicted RBP9.66□□□□□ -0.86
USP40-216ENST00000485943 ANTXR1Q9H6X2 564 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 ELP3Q9H9T3 547 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 MYH7P12883 1935 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 AKAP11Q9UKA4 1901 aa9.66□□□□□ -0.86
USP40-216ENST00000485943 CA12O43570 354 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 AOC2O75106 756 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 HSPA1AP0DMV8 641 aaKnown RBP9.65□□□□□ -0.86
USP40-216ENST00000485943 HSPA1BP0DMV9 641 aaKnown RBP9.65□□□□□ -0.86
USP40-216ENST00000485943 PDE6AP16499 860 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 SLC4A8Q2Y0W8 1093 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 TSHZ3Q63HK5 1081 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 MOB2Q70IA6 237 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 SLAIN1Q8ND83 568 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 IDI2Q9BXS1 227 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 NACAP1Q9BZK3 213 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 SAP30BPQ9UHR5 308 aaKnown RBP9.65□□□□□ -0.86
USP40-216ENST00000485943 MYO5AQ9Y4I1 1855 aaKnown RBP9.65□□□□□ -0.86
USP40-216ENST00000485943 DOCK2Q92608 1830 aa9.65□□□□□ -0.86
USP40-216ENST00000485943 RPAP1Q9BWH6 1393 aaPredicted RBP9.64□□□□□ -0.87
USP40-216ENST00000485943 MANSC4A6NHS7 340 aaPredicted RBP9.64□□□□□ -0.87
USP40-216ENST00000485943 UNCXA6NJT0 531 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 MAP3K7O43318 606 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 SLC3A2P08195 630 aaKnown RBP9.64□□□□□ -0.87
USP40-216ENST00000485943 TDO2P48775 406 aa9.64□□□□□ -0.87
USP40-216ENST00000485943 MFAP1P55081 439 aaKnown RBP9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms