RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, human

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-208	ENST00000485627	MRI	Q9BWK5	157 aa		11.21	□□□□□ -0.61
CTSA-208	ENST00000485627	AGXT2	Q9BYV1	514 aa		11.21	□□□□□ -0.61
CTSA-208	ENST00000485627	NBPF3	Q9H094	633 aa		11.21	□□□□□ -0.61
CTSA-208	ENST00000485627	KCNQ5	Q9NR82	932 aa		11.21	□□□□□ -0.61
CTSA-208	ENST00000485627	ARFGEF1	Q9Y6D6	1849 aa		11.21	□□□□□ -0.62
CTSA-208	ENST00000485627	SNED1	Q8TER0	1413 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	IFIT3	O14879	490 aa	Known RBP	11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	CRK	P46108	304 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	NT5C2	P49902	561 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	TMEM67	Q5HYA8	995 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	CYB5R4	Q7L1T6	521 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	MAPKAPK5	Q8IW41	473 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	UBAC1	Q9BSL1	405 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	MTA3	Q9BTC8	594 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	ZNF287	Q9HBT7	754 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	USP40	Q9NVE5	1235 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	HDAC9	Q9UKV0	1011 aa		11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	ANGEL1	Q9UNK9	670 aa	Known RBP	11.2	□□□□□ -0.62
CTSA-208	ENST00000485627	SBF1	O95248	1867 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	CYP2D7	A0A087X1C5	515 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	KLF18	A0A0U1RQI7	1052 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	CCDC69	A6NI79	296 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	POTEC	B2RU33	542 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	DHX16	O60231	1041 aa	Known RBP	11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	RANBP6	O60518	1105 aa	Known RBP	11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	PFKFB2	O60825	505 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	RAD17	O75943	681 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	USP17L8	P0C7I0	530 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	PDIA4	P13667	645 aa	Known RBP	11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	GJB2	P29033	226 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	ANTXR2	P58335	489 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	RAB3GAP1	Q15042	981 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	IQCA1	Q86XH1	822 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	TMTC2	Q8N394	836 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	GTF3C6	Q969F1	213 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	ZDHHC15	Q96MV8	337 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	MKNK2	Q9HBH9	465 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	INCENP	Q9NQS7	918 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	ZSWIM5	Q9P217	1185 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	SAP30BP	Q9UHR5	308 aa	Known RBP	11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	SERPINA10	Q9UK55	444 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	ZNRF3	Q9ULT6	936 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	KIF3A	Q9Y496	699 aa		11.19	□□□□□ -0.62
CTSA-208	ENST00000485627	MYH2	Q9UKX2	1941 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	YDJC	A8MPS7	323 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	GOLGA8B	A8MQT2	603 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	SH2B2	O14492	632 aa	Predicted RBP	11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	VIL1	P09327	827 aa	Known RBP	11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	POTEI	P0CG38	1075 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	POTEJ	P0CG39	1038 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	CYP2D6	P10635	497 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	PDC	P20941	246 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	PDIA3	P30101	505 aa	Known RBP	11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	RHBDL3	P58872	404 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	CCT2	P78371	535 aa	Known RBP	11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	PICALM	Q13492	652 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	WTAP	Q15007	396 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	C12orf60	Q5U649	245 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	CPLX2	Q6PUV4	134 aa	Known RBP	11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	OGFOD1	Q8N543	542 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	GBP4	Q96PP9	640 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	LLPH	Q9BRT6	129 aa	Known RBP	11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	LAMA4	Q16363	1823 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	TIAM2	Q8IVF5	1701 aa		11.18	□□□□□ -0.62
CTSA-208	ENST00000485627	FLT1	P17948	1338 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	TSPY2	A6NKD2	308 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	PSMD14	O00487	310 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	CPLX1	O14810	134 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	ORC4	O43929	436 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	PRDM1	O75626	825 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	HLA-DOA	P06340	250 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	FGR	P09769	529 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	VEGFA	P15692	232 aa	Predicted RBP	11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	LIFR	P42702	1097 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	EVC	P57679	992 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	HMGN5	P82970	282 aa	Known RBP	11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	SCRN1	Q12765	414 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	NBR1	Q14596	966 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	TNIP1	Q15025	636 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	NFKBIB	Q15653	356 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	SLC4A8	Q2Y0W8	1093 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	CIAPIN1	Q6FI81	312 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	TTC6	Q86TZ1	520 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	ZNF444	Q8N0Y2	327 aa	Predicted RBP	11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	FAM184A	Q8NB25	1140 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	IGDCC4	Q8TDY8	1250 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	TMOD2	Q9NZR1	351 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	SLC12A7	Q9Y666	1083 aa		11.17	□□□□□ -0.62
CTSA-208	ENST00000485627	WDR33	Q9C0J8	1336 aa	Known RBP	11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	LTBP3	Q9NS15	1303 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	GLTPD2	A6NH11	291 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	GOLGA6L22	H0YM25	854 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	ZBTB43	O43298	467 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	METAP2	P50579	478 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	CFAP100	Q494V2	611 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	CCDC178	Q5BJE1	867 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	APOBEC3H	Q6NTF7	200 aa	Known RBP	11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	CDC42EP5	Q6NZY7	148 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	AGBL3	Q8NEM8	1001 aa		11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms